View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_high_8 (Length: 531)
Name: NF4012_high_8
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 10 - 516
Target Start/End: Complemental strand, 27418 - 26912
Alignment:
| Q |
10 |
aagaatattgctattatcttctaagggtctgtatgaactccttggccatgaagaacaaccctccaatatggaatgggagatatcaaccatgatttgtctg |
109 |
Q |
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| T |
27418 |
aagaatattgctattatcttctaagggtctgtatgaactccttggccatgaagaacaaccctccaatatggaatgggagatatcagccatgatttgtctg |
27319 |
T |
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| Q |
110 |
gcggagaaggcctctaaaatcatcagcaggaaacctatagaaacctgcaaacagaatttagtcatccaagaaagttgacattatgattgttaagtatcta |
209 |
Q |
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| T |
27318 |
gcggagaaggcctctaaaatcatcagcaggaaacctatagaaacctgcaaacagaatttagtcatccaaaaaagttgacattatgattgttaagtatcta |
27219 |
T |
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| Q |
210 |
ggaaaaaatgaaatgacaattttcatctattttctttattttcatgtctgcactctgtagtcctgaacacttgcatataacacactgcgtcttacttggt |
309 |
Q |
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| T |
27218 |
ggaaaaaatgaaatgataattttcatctattttctttattttcatgtctgcactctgtagtcctgaacacttgcatataacacactgcgtcttacttggt |
27119 |
T |
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| Q |
310 |
aacattgctttcatttcgatgtgacatatattggtaccctagatgtttaaatcgattgattagacacaacactgttcattgttttattcaaattcatata |
409 |
Q |
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| T |
27118 |
aacattgctttcatttctatgtgacatatattggtaccctagatgtttaaatcgattgattagacacaacactgttcattgttttattcaaattcatata |
27019 |
T |
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| Q |
410 |
atcatattacaaaagaaaaaaccccaatggctaaactgatctctgtactatggagacatgcatttagggagtggttatacatatatctaccttagacacc |
509 |
Q |
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| T |
27018 |
atcatattacaaaagaaaaaaccccaatggctaaactgatctctgtactatggagacatgcatttagggagtggttatacatatatctaccttagacacc |
26919 |
T |
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| Q |
510 |
aattaag |
516 |
Q |
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| T |
26918 |
aattaag |
26912 |
T |
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