View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_high_9 (Length: 514)
Name: NF4012_high_9
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 47235544 - 47235881
Alignment:
| Q |
1 |
gaagagaggagttgtcatatcaacagtgttttaattttatcatttagtgatttgtttttggcgttatgaagaagacatctccattatgtttatcatcaca |
100 |
Q |
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| T |
47235544 |
gaagagaggagttgtcatatcaacagtgttttaattttatcatttagtgatttgtttttggcgttatgaagaagacatctccattatgtttatcatcaaa |
47235643 |
T |
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| Q |
101 |
actagcaagctcagtggcaagtacaatcagccacaccttcactttgtcctccctttctctatatgccttgtttagcttgaaagaaagagaaagagaaagg |
200 |
Q |
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| T |
47235644 |
actagcaagctcagtggcaagtacaatcagccacaccttcactttgtcctccctttctctatatgccttgtttagcttgaaagaaagagaaagagaaagg |
47235743 |
T |
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| Q |
201 |
gtaaaaaccatgtgagtgtgtgtttgataaccttgatgagggggtatgactttttctttgactgtaaaagaaaagtccagggagattgtgacttgactct |
300 |
Q |
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| T |
47235744 |
gtaaaaaccatgtgagtgtgtgtttgataaccttgatgagagggtatgactttttctttgactgtaaaagaaaagtccagggagattgagacttgactct |
47235843 |
T |
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| Q |
301 |
aagnnnnnnnnctaacaagcccagaaagagagaattaaa |
339 |
Q |
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| T |
47235844 |
aag-aaaaaaactaacaagcccagaaagagagaattaaa |
47235881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 405 - 497
Target Start/End: Original strand, 47236003 - 47236095
Alignment:
| Q |
405 |
tgctttccttttcaggatctgaatgaattcctttatacttggatatgtacacaacatatccaaaacatatgtgtgtgtttgtacataccttct |
497 |
Q |
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| T |
47236003 |
tgctttccttttcaggatctgaatgaattcctttatacttggatatgtacacaacatatacaaaacatatgcgtgcgtttgtgcataccttct |
47236095 |
T |
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