View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_11 (Length: 501)
Name: NF4012_low_11
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 64 - 487
Target Start/End: Complemental strand, 28697173 - 28696750
Alignment:
| Q |
64 |
atcttatacaaaaggtttcattccctattactaacattcatttctttttattttgcatcataacagaattttactgcttatccattaaagattgtcctca |
163 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28697173 |
atcttataaaaaaggtttcattccctattactaacattcatttcttcttatttggcatcataacataattttactgcttatccattaaagattgtcctca |
28697074 |
T |
|
| Q |
164 |
gaatttgtgtgccagatctcctttagctttacaatgcttaaagttcatttgtcgttgtgcgagtcaatctagaaaatatgatcaaaaataatttcattgt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
28697073 |
gaatttgtgtgccagatctcctttagctttacaatgcttaaagttcatttgttgttgtgtgagtcaatctagaaaatatgatcaaaaataatttcatggt |
28696974 |
T |
|
| Q |
264 |
acttattaaaataaagttgtacttgaaaatatattgtttttacttctatgatttctctcaaacgtcgatactttttctttatccataaaagagaattgta |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28696973 |
acttattaaaataaagttgtacttgaaaatatattgtttttacttctatgatttctctcaaacgtcaatactttttctttatccataaaagagaattgta |
28696874 |
T |
|
| Q |
364 |
caatggtcattagtgccaccgttaatacttcaattttaaatctactattgattgtcttctatcacaagaaatggttctcaattggttgctttattaattc |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28696873 |
caatggtcattagtgccaccgttaatacttcaattttaaatctactattgattgtcttctatcacaagaaatggttctcaattggttgctttattaattc |
28696774 |
T |
|
| Q |
464 |
caagttgtcaccatagtttatttt |
487 |
Q |
| |
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||||||||||||||| |||||||| |
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| T |
28696773 |
caagttgtcaccataatttatttt |
28696750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 64 - 388
Target Start/End: Complemental strand, 26604593 - 26604271
Alignment:
| Q |
64 |
atcttatacaaaaggtttcattccctattactaacattcatttctttttattttgcatcataacagaattttactgcttatccattaaagattgtcctca |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | || || ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26604593 |
atcttatacaaaaggtttcattccctattactaacatttactttttcatatttggcatcataacagaattttactgcttatccattaaagattgtcctca |
26604494 |
T |
|
| Q |
164 |
gaatttgtgtgccagatctcctttagctttacaatgcttaaagttcatttgtcgttgtgcgagtcaatctagaaaatatgatcaaaaataatttcattgt |
263 |
Q |
| |
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||||||||||| | ||||||||||| ||||||||||||||||||| || |||||||||| ||||||||||||||||||||| |||||||||||||| || |
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| T |
26604493 |
gaatttgtgtgtcggatctcctttacctttacaatgcttaaagtttatatgtcgttgtg--agtcaatctagaaaatatgataaaaaataatttcatggt |
26604396 |
T |
|
| Q |
264 |
acttattaaaataaagttgtacttgaaaatatattgtttttacttctatgatttctctcaaacgtcgatactttttctttatccataaaagagaattgta |
363 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| |
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| T |
26604395 |
acttagtaaaataaagttgtacttgaaaatatattgtttttacttctatgatttctctagaatgtcaatactttttctttatccataaaagagaattgta |
26604296 |
T |
|
| Q |
364 |
caatggtcattagtgccaccgttaa |
388 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
26604295 |
caatggccattagtgccaccgttaa |
26604271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 385 - 486
Target Start/End: Complemental strand, 28692000 - 28691898
Alignment:
| Q |
385 |
ttaatacttcaattttaaa-tctactattgattgtcttctatcacaagaaatggttctcaattggttgctttattaattccaagttgtcaccatagttta |
483 |
Q |
| |
|
||||||||||| ||||| | |||| ||||||||| | ||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
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|
| T |
28692000 |
ttaatacttcatttttatagtctattattgattggcgtctattacaagaaatggttctcaattggttgcttaattaaatccaagttgtcaccataattta |
28691901 |
T |
|
| Q |
484 |
ttt |
486 |
Q |
| |
|
||| |
|
|
| T |
28691900 |
ttt |
28691898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 387
Target Start/End: Original strand, 18116435 - 18116577
Alignment:
| Q |
245 |
tcaaaaataatttcattgtacttattaaaataaagttgtacttgaaaatatattgtttttacttctatgatttctctcaaacgtcgatactttttcttta |
344 |
Q |
| |
|
|||||||||||||||| ||||| | | |||| | ||||| || || ||||||||| ||||| ||||||||||||| | ||||| || ||| | | |
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|
| T |
18116435 |
tcaaaaataatttcatgatacttttaagaatataattgtatatgcaattatattgttggtacttttatgatttctctcgctcatcgatctttgttcgtca |
18116534 |
T |
|
| Q |
345 |
tccataaaagagaattgtacaatggtcattagtgccaccgtta |
387 |
Q |
| |
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|||||| || | ||||||| ||||||||||||||||||||||| |
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|
| T |
18116535 |
tccatataaaataattgtaaaatggtcattagtgccaccgtta |
18116577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 326
Target Start/End: Original strand, 27271221 - 27271303
Alignment:
| Q |
244 |
atcaaaaataatttcattgtacttattaaaataaagttgtacttgaaaatatattgtttttacttctatgatttctctcaaac |
326 |
Q |
| |
|
||||||||||||| | | ||||| |||||||| | ||| | |||||| ||||| |||||||||| ||||||||||||||||| |
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|
| T |
27271221 |
atcaaaaataattccttagtactccttaaaatataattggatttgaaattatatagtttttacttttatgatttctctcaaac |
27271303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 21205767 - 21205807
Alignment:
| Q |
286 |
ttgaaaatatattgtttttacttctatgatttctctcaaac |
326 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||||||| |
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| T |
21205767 |
ttgaaattatatagtttttacttctatgatttctctcaaac |
21205807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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