View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4012_low_20 (Length: 398)

Name: NF4012_low_20
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4012_low_20
NF4012_low_20
[»] chr7 (3 HSPs)
chr7 (301-396)||(42021719-42021814)
chr7 (21-96)||(42022033-42022108)
chr7 (173-242)||(42021873-42021946)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 301 - 396
Target Start/End: Complemental strand, 42021814 - 42021719
Alignment:
Q  301 tcccaagaaattaaacagaaagatagaatcaaccagggcttttacatccacatatcaacaaagagaatccaattctatcttgttccctttgcttct 396  Q
    |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  42021814 tcccaagaaattaaacagaaagatagaatcaatcagggttcttacatccacatatcaacaaagagaatccaattctatcttgttccttttgtttct 42021719  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 42022108 - 42022033
Alignment:
Q  21 aattaagcagcatggagtacaaaaccaaaacgcattcataaatagatcgttgatttagattaaagggccctgcata 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42022108 aattaagcagcatggagtacaaaaccaaaacgcattcataaatagatcgttgatttagattgaagggccctgcata 42022033  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 42021946 - 42021873
Alignment:
Q  173 taggttaattgtaacagtacatgtaattacatta----gaattaccttaaaatctgccagcatcccattacatt 242  Q
    ||||||||||||||||||||||||||||||||||     ||||||||||||||||||| |||||||||||||||    
T  42021946 taggttaattgtaacagtacatgtaattacattacaattaattaccttaaaatctgcctgcatcccattacatt 42021873  T

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