View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4012_low_21 (Length: 396)

Name: NF4012_low_21
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4012_low_21
NF4012_low_21
[»] chr7 (20 HSPs)
chr7 (10-378)||(41840934-41841290)
chr7 (179-229)||(12306899-12306949)
chr7 (176-226)||(48158816-48158866)
chr7 (172-206)||(45004965-45004999)
chr7 (178-215)||(12306670-12306707)
chr7 (58-110)||(44391203-44391255)
chr7 (178-226)||(45004910-45004958)
chr7 (178-226)||(48253091-48253139)
chr7 (60-131)||(40491679-40491750)
chr7 (60-134)||(42752162-42752237)
chr7 (60-134)||(4228610-4228684)
chr7 (60-134)||(35105256-35105330)
chr7 (85-134)||(16079465-16079514)
chr7 (61-134)||(28070798-28070871)
chr7 (58-99)||(32683701-32683742)
chr7 (89-134)||(41788414-41788459)
chr7 (184-225)||(42064528-42064568)
chr7 (58-134)||(33936790-33936866)
chr7 (193-248)||(40422497-40422553)
chr7 (88-132)||(40422893-40422937)
[»] chr1 (25 HSPs)
chr1 (60-134)||(13344839-13344913)
chr1 (58-134)||(4347040-4347116)
chr1 (178-229)||(26439790-26439841)
chr1 (183-229)||(36780234-36780280)
chr1 (60-134)||(40352457-40352531)
chr1 (181-249)||(12655145-12655214)
chr1 (58-134)||(36447660-36447736)
chr1 (179-226)||(6041617-6041664)
chr1 (178-217)||(32088685-32088724)
chr1 (58-106)||(6041785-6041833)
chr1 (178-213)||(15478113-15478148)
chr1 (173-228)||(22383385-22383440)
chr1 (184-226)||(8381909-8381951)
chr1 (192-226)||(14644622-14644656)
chr1 (179-225)||(24587835-24587881)
chr1 (184-226)||(30557441-30557483)
chr1 (176-225)||(37131860-37131909)
chr1 (74-134)||(47085899-47085960)
chr1 (183-228)||(47322023-47322068)
chr1 (176-204)||(2565643-2565671)
chr1 (59-134)||(5268317-5268393)
chr1 (86-134)||(5930826-5930874)
chr1 (94-134)||(7335899-7335939)
chr1 (179-215)||(9939841-9939877)
chr1 (62-134)||(13905561-13905633)
[»] chr4 (33 HSPs)
chr4 (58-133)||(5835778-5835853)
chr4 (56-134)||(32812165-32812243)
chr4 (58-134)||(753205-753281)
chr4 (46-134)||(3950293-3950379)
chr4 (178-226)||(45329771-45329819)
chr4 (187-226)||(39438713-39438752)
chr4 (58-129)||(43868239-43868310)
chr4 (183-229)||(31013850-31013896)
chr4 (176-226)||(35064988-35065038)
chr4 (60-134)||(38740287-38740361)
chr4 (58-99)||(5025591-5025632)
chr4 (181-226)||(46344946-46344991)
chr4 (173-213)||(13947798-13947838)
chr4 (58-134)||(33560482-33560557)
chr4 (176-212)||(33560681-33560717)
chr4 (58-134)||(39000530-39000606)
chr4 (57-108)||(8283295-8283346)
chr4 (75-134)||(17898057-17898115)
chr4 (60-134)||(54488632-54488707)
chr4 (183-229)||(2326928-2326974)
chr4 (176-226)||(11271649-11271699)
chr4 (176-206)||(25318992-25319022)
chr4 (58-131)||(1455480-1455553)
chr4 (181-226)||(2635088-2635133)
chr4 (85-134)||(22699769-22699818)
chr4 (85-134)||(22980712-22980761)
chr4 (85-134)||(22994299-22994348)
chr4 (181-226)||(26617742-26617787)
chr4 (89-134)||(36150631-36150676)
chr4 (58-131)||(48575485-48575558)
chr4 (186-227)||(51345164-51345205)
chr4 (58-122)||(24364103-24364167)
chr4 (176-208)||(29728945-29728977)
[»] chr2 (20 HSPs)
chr2 (178-251)||(9943322-9943396)
chr2 (176-226)||(33502959-33503009)
chr2 (58-134)||(12110925-12111001)
chr2 (47-99)||(13238935-13238987)
chr2 (58-129)||(13475947-13476019)
chr2 (183-226)||(15928551-15928594)
chr2 (85-134)||(23359938-23359987)
chr2 (61-105)||(7630532-7630576)
chr2 (58-109)||(33502771-33502823)
chr2 (181-221)||(36979322-36979362)
chr2 (60-134)||(3853951-3854026)
chr2 (187-226)||(37561632-37561671)
chr2 (60-134)||(1763271-1763345)
chr2 (60-134)||(26806238-26806312)
chr2 (176-226)||(44810508-44810558)
chr2 (58-130)||(6767777-6767849)
chr2 (58-134)||(10618861-10618937)
chr2 (62-94)||(26627193-26627225)
chr2 (186-226)||(37420317-37420357)
chr2 (58-130)||(40704682-40704754)
[»] scaffold0793 (1 HSPs)
scaffold0793 (58-134)||(5155-5231)
[»] chr5 (12 HSPs)
chr5 (50-130)||(2868324-2868405)
chr5 (178-229)||(7637494-7637545)
chr5 (183-226)||(39097189-39097232)
chr5 (184-226)||(12404997-12405039)
chr5 (176-229)||(11648004-11648057)
chr5 (85-134)||(22811082-22811131)
chr5 (60-134)||(19784869-19784944)
chr5 (180-226)||(16293996-16294042)
chr5 (181-226)||(3043119-3043164)
chr5 (89-134)||(10957198-10957242)
chr5 (183-228)||(22226353-22226398)
chr5 (176-212)||(29922833-29922869)
[»] scaffold0024 (1 HSPs)
scaffold0024 (174-226)||(23701-23753)
[»] chr6 (17 HSPs)
chr6 (55-134)||(3605731-3605810)
chr6 (176-215)||(33136593-33136632)
chr6 (58-134)||(1499998-1500074)
chr6 (183-223)||(26550447-26550487)
chr6 (183-226)||(2002582-2002625)
chr6 (187-226)||(7952830-7952869)
chr6 (53-134)||(10054969-10055051)
chr6 (176-226)||(25195474-25195524)
chr6 (178-212)||(33141819-33141853)
chr6 (88-125)||(2234158-2234195)
chr6 (54-115)||(6885904-6885965)
chr6 (89-134)||(25208724-25208769)
chr6 (189-226)||(29240575-29240612)
chr6 (187-227)||(4080392-4080432)
chr6 (65-117)||(9043722-9043774)
chr6 (58-125)||(13428858-13428926)
chr6 (180-212)||(31305964-31305996)
[»] chr3 (23 HSPs)
chr3 (60-134)||(42644304-42644379)
chr3 (176-226)||(48089499-48089549)
chr3 (58-134)||(39657981-39658057)
chr3 (58-134)||(44225607-44225683)
chr3 (178-226)||(52925723-52925771)
chr3 (60-134)||(25181252-25181326)
chr3 (60-134)||(31766160-31766234)
chr3 (85-134)||(7012682-7012731)
chr3 (58-99)||(53078435-53078476)
chr3 (60-124)||(30958145-30958209)
chr3 (60-124)||(30973957-30974021)
chr3 (59-131)||(49158621-49158693)
chr3 (58-134)||(53567974-53568050)
chr3 (179-226)||(3776464-3776511)
chr3 (187-224)||(836129-836166)
chr3 (89-134)||(10852727-10852772)
chr3 (85-134)||(23918884-23918933)
chr3 (59-96)||(27825291-27825328)
chr3 (178-215)||(44958718-44958755)
chr3 (178-226)||(3845224-3845272)
chr3 (178-226)||(7262823-7262871)
chr3 (175-215)||(35264520-35264560)
chr3 (183-215)||(54596754-54596786)
[»] chr8 (19 HSPs)
chr8 (60-134)||(36779441-36779515)
chr8 (57-134)||(38715191-38715268)
chr8 (58-134)||(29970852-29970928)
chr8 (66-134)||(38516348-38516416)
chr8 (59-134)||(1836124-1836199)
chr8 (58-133)||(2031907-2031982)
chr8 (183-229)||(13384771-13384817)
chr8 (58-116)||(41408258-41408316)
chr8 (181-226)||(42455837-42455882)
chr8 (58-110)||(20169493-20169545)
chr8 (58-134)||(35550271-35550347)
chr8 (60-134)||(31246299-31246374)
chr8 (60-134)||(10368063-10368137)
chr8 (172-226)||(15677904-15677958)
chr8 (181-226)||(5859180-5859225)
chr8 (89-134)||(19649236-19649281)
chr8 (58-99)||(41891802-41891843)
chr8 (178-226)||(4554259-4554307)
chr8 (174-226)||(11038107-11038159)
[»] scaffold0172 (1 HSPs)
scaffold0172 (58-134)||(15240-15316)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 41841290 - 41840934
Alignment:
Q  10 attattcttgtttcttagtctaagtgcatgtttggtttttacagtgacaaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtg 109  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||    
T  41841290 attattcttgtttcttattctaagtgcatgtttggtttttacagtgacaaaattgattttgaatgaatt--------------gattttacttgaaagtg 41841205  T
Q  110 acttgaatgtaaagtgatttatgttagttgaaaggtaaatttcactgtagaaatcactttaactattcgagagcaaccaaacatgtcaaaatcaatttta 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41841204 acttgaatgtaaagtgatttatgttagttgaaaggtaaatttcactgtagaaatcactttaactattcgagagcaaccaaacatgtcaaagtcaatttta 41841105  T
Q  210 cacctccataatcaattatgtggcttcaaatgtggaaccaaatgtcggctaagcgtatgtttagattaacctagagattggcaaaatcacggtgagcca- 308  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41841104 cacctccataatcaattatgtggcttcaaatgtggaaccaaacgtcggctaagcgtatgtttagattaacctagagattggcaaaatcacggtgagccac 41841005  T
Q  309 -ccgtggttttggcgcaagttgtggagactgaagattcaacaaaataactgattttgtcaaactcccggct 378  Q
     ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841004 cccgtggttttggcacaagttgtggagactgaagattcaacaaaataactgattttgtcaaactcccggct 41840934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 12306949 - 12306899
Alignment:
Q  179 agagcaaccaaacatgtcaaaatcaattttacacctccataatcaattatg 229  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  12306949 agagcaaccaaacatgtcaaaatcaattttgcacctccaaaatcaattatg 12306899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 48158866 - 48158816
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  48158866 tcgagagcaaccaaacatgtcaaaatcaattttacgccttcataatcaatt 48158816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 45004999 - 45004965
Alignment:
Q  172 ctattcgagagcaaccaaacatgtcaaaatcaatt 206  Q
    |||||||||||||||||||||||||||||||||||    
T  45004999 ctattcgagagcaaccaaacatgtcaaaatcaatt 45004965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 12306707 - 12306670
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacacctc 215  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  12306707 gagagcaaccaaacatgtcaaaatcaattctacacctc 12306670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 44391255 - 44391203
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtga 110  Q
    |||||| |||||||||||||| ||| |||||||||||||||| || |||||||    
T  44391255 aaaatttattttgaatgaattgattatgtagaattgattttagttaaaagtga 44391203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 45004958 - 45004910
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||| ||||||||||||||||||||||| |||||||| | ||||||||    
T  45004958 gagagtaaccaaacatgtcaaaatcaattctacacctctagaatcaatt 45004910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 48253139 - 48253091
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||||||| ||||||||||||||||||||||||  ||| ||||||||||    
T  48253139 gagagcaaacaaacatgtcaaaatcaattttacctctctataatcaatt 48253091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 40491750 - 40491679
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttat 131  Q
    |||||||||||| |||||| ||| |||| ||||||||||   | ||||||| ||||| ||||||||||||||    
T  40491750 aattgattttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttat 40491679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 42752162 - 42752237
Alignment:
Q  60 aattgattttgaatgaatttattttgt-agaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||  ||||| ||||||| ||||||||||||  || ||||||| |||||||| || |||||||||||    
T  42752162 aattgattttgacagaattgattttgttagaattgatttttgttaaaagtgagttgaatgtgaattgatttatgtt 42752237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 4228684 - 4228610
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||  |||||| |||||  | ||||||||||  || ||||||| ||||||| |||||||||||||||    
T  4228684 aattgattttggttgaattgattttacataattgattttgattaaaagtgagttgaatgaaaagtgatttatgtt 4228610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 35105330 - 35105256
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||| |||||| ||||| || |||||||| |   ||||||||  ||||||| |||||||||||||||    
T  35105330 aattgattttgagtgaattgattttttaaaattgattctggatgaaagtggattgaatgaaaagtgatttatgtt 35105256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 16079514 - 16079465
Alignment:
Q  85 gtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||||  || ||||||| ||||||| |||||||||||||||    
T  16079514 gtagaattgattttggtttaaagtgagttgaatgaaaagtgatttatgtt 16079465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 28070871 - 28070798
Alignment:
Q  61 attgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||| |||| |||||||| ||||||||| |  ||||| ||| |||||||| ||||| ||| ||||    
T  28070871 attgattttgaattaattaattttgtaaaattgatttcaactgaaattgagttgaatgtcaagtggtttctgtt 28070798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 32683742 - 32683701
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgatttta 99  Q
    |||||||||||||| |||||| ||| ||||||||||||||||    
T  32683742 aaaattgattttgattgaattgattatgtagaattgatttta 32683701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 41788459 - 41788414
Alignment:
Q  89 aattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||| ||||| || ||||| |||||||||||||||||    
T  41788459 aattgattttactagaaagggaattgaaggtaaagtgatttatgtt 41788414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 42064528 - 42064568
Alignment:
Q  184 aaccaaacatgtcaaaatcaattttacacctccataatcaat 225  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  42064528 aaccaaacatgtcaaa-tcaattttacacctctataatcaat 42064568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 33936790 - 33936866
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||||   ||||| |||| ||||||||  ||||  || ||||| | |||||||||||||||||||||||    
T  33936790 aaaattgattttggtagaattgatttcgtagaattacttttggttcaaagttaattgaatgtaaagtgatttatgtt 33936866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 40422553 - 40422497
Alignment:
Q  193 tgtcaaaatcaattttacacctccataatcaattat-gtggcttcaaatgtggaacc 248  Q
    ||||| |||||| || |||||||||||||||||| | |||||| |||||||||||||    
T  40422553 tgtcagaatcaacttcacacctccataatcaattctggtggctccaaatgtggaacc 40422497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 40422937 - 40422893
Alignment:
Q  88 gaattgattttacttgaaagtgacttgaatgtaaagtgatttatg 132  Q
    ||||||||||||||| ||||| | ||||||||||||| |||||||    
T  40422937 gaattgattttacttaaaagttagttgaatgtaaagtaatttatg 40422893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 13344913 - 13344839
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||| |||||| |||||||||||||||||||  || ||||||| ||||| |||||||||||||||||    
T  13344913 aattgattttgattgaattgattttgtagaattgattttggttaaaagtgagttgaacgtaaagtgatttatgtt 13344839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 4347116 - 4347040
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||||   ||||| |||||||||||||||||||  || ||||||| |||||||||||||||||||||||    
T  4347116 aaaattgattttggtagaattgattttgtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtt 4347040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 26439841 - 26439790
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacacctccataatcaattatg 229  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||| |||||    
T  26439841 gagagcaatcaaacatgtcaaaatcaattttacaccgccataatcatttatg 26439790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 36780234 - 36780280
Alignment:
Q  183 caaccaaacatgtcaaaatcaattttacacctccataatcaattatg 229  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||    
T  36780234 caaccaaacatatcaaaatcaattctacacctccataatcaattatg 36780280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 40352531 - 40352457
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||  ||||| ||||||| |||||||||||  || ||||||| || ||||||||||||||||||||    
T  40352531 aattgattttgatagaattgattttgtggaattgattttggttaaaagtgagtttaatgtaaagtgatttatgtt 40352457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 12655214 - 12655145
Alignment:
Q  181 agcaaccaaacatgtcaaaatcaattttacacctccataatcaattat-gtggcttcaaatgtggaacca 249  Q
    |||||| ||||||||||||||||| |||||||||||| |||||||||| ||  || ||||||||||||||    
T  12655214 agcaactaaacatgtcaaaatcaactttacacctccacaatcaattatggttactgcaaatgtggaacca 12655145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 36447660 - 36447736
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||||| |||||| |||||||||||||||||||  |  ||||||| || |  |||||||||||||||||    
T  36447660 aaaattgattttgattgaattaattttgtagaattgattttgatcaaaagtgagttaagagtaaagtgatttatgtt 36447736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 6041664 - 6041617
Alignment:
Q  179 agagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||||||    
T  6041664 agagcaaccaaacatatcaaaatcaattttacacctctagaatcaatt 6041617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 32088685 - 32088724
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacacctcca 217  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  32088685 gagagcaaccaaacatgtcaaaatcaattttacacgtcca 32088724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 6041833 - 6041785
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaa 106  Q
    |||||| |||||||||||||| |||||||| | ||||||||||||||||    
T  6041833 aaaattaattttgaatgaattgattttgtaaagttgattttacttgaaa 6041785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 213
Target Start/End: Original strand, 15478113 - 15478148
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacacc 213  Q
    ||||||||||||||||||||||||||||| ||||||    
T  15478113 gagagcaaccaaacatgtcaaaatcaattctacacc 15478148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 22383385 - 22383440
Alignment:
Q  173 tattcgagagcaaccaaacatgtcaaaatcaattttacacctccataatcaattat 228  Q
    ||||||| ||||||||| | |||||||||||||||||||| || | ||||||||||    
T  22383385 tattcgaaagcaaccaagcgtgtcaaaatcaattttacacttctagaatcaattat 22383440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 8381951 - 8381909
Alignment:
Q  184 aaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||||||||||||||||||||||||| ||||| | ||||||||    
T  8381951 aaccaaacatgtcaaaatcaattttatacctctagaatcaatt 8381909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 14644656 - 14644622
Alignment:
Q  192 atgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||||||||||||||||||| ||||||||||||||    
T  14644656 atgtcaaaatcaattttacatctccataatcaatt 14644622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 24587881 - 24587835
Alignment:
Q  179 agagcaaccaaacatgtcaaaatcaattttacacctccataatcaat 225  Q
    ||||||||||||||||||| |||||||| |||||||| | |||||||    
T  24587881 agagcaaccaaacatgtcacaatcaattctacacctctagaatcaat 24587835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 30557483 - 30557441
Alignment:
Q  184 aaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||||||||||||| |||||||| |||||||||| ||||||||    
T  30557483 aaccaaacatgtcagaatcaattctacacctccagaatcaatt 30557441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 37131909 - 37131860
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaattttacacctccataatcaat 225  Q
    ||||||||||||||||||| ||||||||||| || ||||| | |||||||    
T  37131909 tcgagagcaaccaaacatgccaaaatcaattctatacctctagaatcaat 37131860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 47085960 - 47085899
Alignment:
Q  74 gaatttattttg-tagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||| |||||| |||||||||||||| || ||||||| |||||||| || |||||||||||    
T  47085960 gaattgattttgatagaattgattttaattaaaagtgagttgaatgtgaattgatttatgtt 47085899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 47322023 - 47322068
Alignment:
Q  183 caaccaaacatgtcaaaatcaattttacacctccataatcaattat 228  Q
    |||| ||||||||||||||||||| |||||||||| ||| ||||||    
T  47322023 caacaaaacatgtcaaaatcaattctacacctccacaataaattat 47322068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 2565671 - 2565643
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaa 204  Q
    |||||||||||||||||||||||||||||    
T  2565671 tcgagagcaaccaaacatgtcaaaatcaa 2565643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 5268393 - 5268317
Alignment:
Q  59 aaattgattttgaa-tgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||||| |||| | || ||||| |||||||| | | | ||||||| |||||||||||||||||| ||||    
T  5268393 aaattgattttgaaatgaactgatcttgtaaaattgattctgcctaaaagtgagttgaatgtaaagtgatttttgtt 5268317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 5930874 - 5930826
Alignment:
Q  86 tagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||||  || ||||| | |||||||||||||||||||||||    
T  5930874 tagaattgattttggttaaaagtaaattgaatgtaaagtgatttatgtt 5930826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 7335899 - 7335939
Alignment:
Q  94 attttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||| || ||||||| |||||||||||||||||||||||    
T  7335899 attttagttaaaagtgagttgaatgtaaagtgatttatgtt 7335939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 9939841 - 9939877
Alignment:
Q  179 agagcaaccaaacatgtcaaaatcaattttacacctc 215  Q
    |||| |||||||||||||||||| |||||||||||||    
T  9939841 agaggaaccaaacatgtcaaaattaattttacacctc 9939877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 13905561 - 13905633
Alignment:
Q  62 ttgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||||||| || ||||| || |||||||| ||||| | || |||||||| || || ||||||||    
T  13905561 ttgattttgaatgaattgatattgtaaaactgattttagttgaatgcgagttgaatgtgaattggtttatgtt 13905633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 5835853 - 5835778
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgt 133  Q
    |||||||||||||| |||||| |||||||||||||||||||  || ||| ||| ||||||| ||||||||||||||    
T  5835853 aaaattgattttgattgaattgattttgtagaattgattttgattaaaactgaattgaatgaaaagtgatttatgt 5835778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 32812165 - 32812243
Alignment:
Q  56 acaaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||| | ||||||||| || ||||| || ||||||||| |||||||||||| |||| ||||||||| ||||||||    
T  32812165 acaaaattaagtttgaatgagttgattttatacaattgatttgacttgaaagtgaattgagtgtaaagtggtttatgtt 32812243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 753281 - 753205
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattga-ttttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||||||||||| ||||||||| |||||| |||||||| ||| ||||  ||||||||| |||||||||||    
T  753281 aaaattgattttgaatgaatctattttgtaaaattgatttttactt-aaaatgacccgaatgtaaaatgatttatgtt 753205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 3950293 - 3950379
Alignment:
Q  46 ttttacagtgacaaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||| ||||||||| | |||||||||||||||||||| |||| |||||  |||||||| |||||| ||| |||  ||||||||||||||    
T  3950293 ttttgcagtgacaacaatgattttgaatgaatttattctgtaaaattgggtttacttgtaagtgagttgtatg--aagtgatttatgtt 3950379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 45329819 - 45329771
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||||    
T  45329819 gagagcaaccaaacatgttaaagtcaattttacacctctataatcaatt 45329771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 39438752 - 39438713
Alignment:
Q  187 caaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  39438752 caaacatgtcaaaatcaattttacacctccaaaatcaatt 39438713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 43868310 - 43868239
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgattt 129  Q
    ||||||||||||||||||||| |||||||| |||| ||| || || ||||| | ||||| ||||||||||||    
T  43868310 aaaattgattttgaatgaattgattttgtaaaattaattctagttaaaagtaagttgaaagtaaagtgattt 43868239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 31013850 - 31013896
Alignment:
Q  183 caaccaaacatgtcaaaatcaattttacacctccataatcaattatg 229  Q
    |||||||||||||||||||||||||||||| || | |||||||||||    
T  31013850 caaccaaacatgtcaaaatcaattttacacatctaaaatcaattatg 31013896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 35065038 - 35064988
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||| |||||||||| |||||| |||||||| |||||||||||||||||||    
T  35065038 tcgaaagcaaccaaaaatgtcataatcaattctacacctccataatcaatt 35064988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 38740287 - 38740361
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||||||||| |||||||| ||||||||||   | ||||||| |||||  | ||||||||||||||    
T  38740287 aattgattttgaatgaattgattttgtaaaattgattttggataaaagtgagttgaagttgaagtgatttatgtt 38740361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 5025632 - 5025591
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgatttta 99  Q
    |||||||||||||| |||||| ||||||||||||||||||||    
T  5025632 aaaattgattttgattgaattgattttgtagaattgatttta 5025591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 46344946 - 46344991
Alignment:
Q  181 agcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||||    
T  46344946 agcaaccaaacatgtcagaattaattatacacctccataatcaatt 46344991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 13947798 - 13947838
Alignment:
Q  173 tattcgagagcaaccaaacatgtcaaaatcaattttacacc 213  Q
    ||||| |||| ||||||||||||||||||||||||||||||    
T  13947798 tattctagagaaaccaaacatgtcaaaatcaattttacacc 13947838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 33560482 - 33560557
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||| |||||||||||||||| |||| ||| ||| |||||  ||||||||||| ||||||||||| || ||||||||    
T  33560482 aaaaatgattttgaatgaattaatttcgtaaaatggatttg-cttgaaagtgagttgaatgtaaattggtttatgtt 33560557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 33560681 - 33560717
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaattttacac 212  Q
    |||||||||||||||||||||||||||||| ||||||    
T  33560681 tcgagagcaaccaaacatgtcaaaatcaatgttacac 33560717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 39000530 - 39000606
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||||| |||||| ||||||||||||||| |||| || |||||||  | |||  ||| |||||||||||    
T  39000530 aaaattgattttgattgaattgattttgtagaattgagtttagttaaaagtgagcttaataaaaaatgatttatgtt 39000606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 8283295 - 8283346
Alignment:
Q  57 caaaattgattttgaatgaatttattttgtagaattgattttacttgaaagt 108  Q
    |||||||||||||||||||||| | ||| || ||||||||| ||||||||||    
T  8283295 caaaattgattttgaatgaattgagtttttaaaattgatttaacttgaaagt 8283346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 17898057 - 17898115
Alignment:
Q  75 aatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||| |||||||| |||||||| | || |||||||| |||||||||||||||||||||||    
T  17898057 aattgattttgtataattgattctgct-gaaagtgagttgaatgtaaagtgatttatgtt 17898115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 54488707 - 54488632
Alignment:
Q  60 aattgattttgaatgaatttattttgt-agaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||  ||||| ||||||| ||||||||||||  || ||||||| |||||||| || |||||||||||    
T  54488707 aattgattttgacagaattgattttgttagaattgatttttgttaaaagtgagttgaatgtgaattgatttatgtt 54488632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 2326928 - 2326974
Alignment:
Q  183 caaccaaacatgtcaaaatcaattttacacctccataatcaattatg 229  Q
    ||||||||||||||| |||||||| || ||||||||||| |||||||    
T  2326928 caaccaaacatgtcataatcaattctatacctccataattaattatg 2326974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 11271649 - 11271699
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||| |||||||| || |||||||||||||||||||| |||| ||||||||    
T  11271649 tcgacagcaaccatacttgtcaaaatcaattttacacttccagaatcaatt 11271699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 25319022 - 25318992
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaatt 206  Q
    |||||||||||||||||||||||||||||||    
T  25319022 tcgagagcaaccaaacatgtcaaaatcaatt 25318992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 1455480 - 1455553
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttat 131  Q
    ||||||||  ||||||||||| ||||||||||| |||||  || | ||| ||| || |||||||||||||||||    
T  1455480 aaaattgagcttgaatgaattgattttgtagaactgattccacctaaaattgagttcaatgtaaagtgatttat 1455553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 2635133 - 2635088
Alignment:
Q  181 agcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||| |||||||||||||||||||||||||| || | ||||||||    
T  2635133 agcaatcaaacatgtcaaaatcaattttacacttctagaatcaatt 2635088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 22699818 - 22699769
Alignment:
Q  85 gtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||||  || ||||| | |||||||||||||||||||||||    
T  22699818 gtagaattgattttggttaaaagtaagttgaatgtaaagtgatttatgtt 22699769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 22980712 - 22980761
Alignment:
Q  85 gtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||||  || ||||| | |||||||||||||||||||||||    
T  22980712 gtagaattgattttggttaaaagtaagttgaatgtaaagtgatttatgtt 22980761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 22994299 - 22994348
Alignment:
Q  85 gtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||||  || ||||| | |||||||||||||||||||||||    
T  22994299 gtagaattgattttggttaaaagtaagttgaatgtaaagtgatttatgtt 22994348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 26617742 - 26617787
Alignment:
Q  181 agcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||| ||||||||||||||||||||||||||| || | ||||||||    
T  26617742 agcatccaaacatgtcaaaatcaattttacacatctagaatcaatt 26617787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 36150676 - 36150631
Alignment:
Q  89 aattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||  || ||||||| |||||||||||||||||||||||    
T  36150676 aattgattttgattaaaagtgagttgaatgtaaagtgatttatgtt 36150631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 48575558 - 48575485
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttat 131  Q
    |||||| |||||||||||||| |||||||| ||||||||||   | ||| ||| ||||||||||| || |||||    
T  48575558 aaaattaattttgaatgaattgattttgtaaaattgatttttgataaaaatgagttgaatgtaaaatggtttat 48575485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 51345205 - 51345164
Alignment:
Q  186 ccaaacatgtcaaaatcaattttacacctccataatcaatta 227  Q
    ||||||||||||||| ||||| |||||||||| |||||||||    
T  51345205 ccaaacatgtcaaaaccaattctacacctccaaaatcaatta 51345164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 24364103 - 24364167
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaa 122  Q
    ||||||||||||||||||||| ||| |||| |||||||| |   | ||||||| |||||||||||    
T  24364103 aaaattgattttgaatgaattgattatgtaaaattgattctcactaaaagtgatttgaatgtaaa 24364167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 29728977 - 29728945
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaatttt 208  Q
    |||||||||||||||| ||||||||||||||||    
T  29728977 tcgagagcaaccaaacttgtcaaaatcaatttt 29728945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 9943396 - 9943322
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacacctccataatcaattat-gtggcttcaaatgtggaaccaaa 251  Q
    |||||||||||||||||| |||||||||||||||||| || |||||||| | || ||| ||||||||||||||||    
T  9943396 gagagcaaccaaacatgttaaaatcaattttacaccttcagaatcaattttggttgctccaaatgtggaaccaaa 9943322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 33502959 - 33503009
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  33502959 tcgagagcaaccaaacatgtcaaaatcaattttacaccttcagaatcaatt 33503009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 12111001 - 12110925
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||||  ||||| |||||||  ||||||||||  || ||||||| |||||| ||||||||||||||||    
T  12111001 aaaattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgtt 12110925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 13238987 - 13238935
Alignment:
Q  47 tttacagtgacaaaattgattttgaatgaatttattttgtagaattgatttta 99  Q
    ||||||||| ||||||||||||||| |||||| |||||||| |||||||||||    
T  13238987 tttacagtggcaaaattgattttgattgaattcattttgtaaaattgatttta 13238935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 13476019 - 13475947
Alignment:
Q  58 aaaattgattttgaat-gaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgattt 129  Q
    |||||||||||||||  ||||| |||||||  ||||||||||||||  |||||| ||||||||||||||||||    
T  13476019 aaaattgattttgaaacgaattgattttgttaaattgattttacttataagtgaattgaatgtaaagtgattt 13475947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 15928551 - 15928594
Alignment:
Q  183 caaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||||||||||||||||||||||| |||||||||| ||||||||    
T  15928551 caaccaaacatgtcaaaatcaattctacacctccagaatcaatt 15928594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 23359938 - 23359987
Alignment:
Q  85 gtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||||  || ||||||| |||||||||||||||||||||||    
T  23359938 gtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtt 23359987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 7630576 - 7630532
Alignment:
Q  61 attgattttgaatgaatttattttgtagaattgattttacttgaa 105  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||    
T  7630576 attgattttgaatgaattgattttgtaaaattgattttagttgaa 7630532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 33502771 - 33502823
Alignment:
Q  58 aaaattgattttgaatgaattt-attttgtagaattgattttacttgaaagtg 109  Q
    |||||||||||||||||||||| |||||||| ||||||||| |||| ||||||    
T  33502771 aaaattgattttgaatgaatttgattttgtaaaattgatttcacttaaaagtg 33502823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 36979362 - 36979322
Alignment:
Q  181 agcaaccaaacatgtcaaaatcaattttacacctccataat 221  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  36979362 agcaaccaaacatgtcaaaatcaattttacaggtccataat 36979322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 3854026 - 3853951
Alignment:
Q  60 aattgattttgaatgaatttattttg-tagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||| |||||  ||||| |||||| |||||||||||||  || ||||||| ||||||||||| |||||||||||    
T  3854026 aattgagtttgatggaattgattttgatagaattgattttgattaaaagtgagttgaatgtaaattgatttatgtt 3853951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 37561671 - 37561632
Alignment:
Q  187 caaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  37561671 caaacatgtcaaaatcaattttacacctctagaatcaatt 37561632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 1763345 - 1763271
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||   |||| |||||||| ||||||||||  || ||| ||| |||||| ||||||||||||||||    
T  1763345 aattgattttgataaaattgattttgtaaaattgattttggttaaaattgagttgaatttaaagtgatttatgtt 1763271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 26806238 - 26806312
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||  |||||| |||||  ||||||||||||  || ||||||| |||| || |||||||||||||||    
T  26806238 aattgattttggttgaattaattttacagaattgattttgattaaaagtgagttgagtgaaaagtgatttatgtt 26806312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 44810558 - 44810508
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||||||||||| |  | ||||||| ||||||||||||||||||||||    
T  44810558 tcgagagcaaccaaataaattaaaatcagttttacacctccataatcaatt 44810508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 6767849 - 6767777
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgattta 130  Q
    |||| ||||||||||| || | |||||||| |||||||| |  || ||| ||| |||||||||||||||||||    
T  6767849 aaaaatgattttgaataaactgattttgtaaaattgattgtgattaaaaatgagttgaatgtaaagtgattta 6767777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 10618861 - 10618937
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||| | |||||| |||||||| |||||||| ||  | ||| ||| ||||| ||||||||| |||||||    
T  10618861 aaaattgatttttagtgaattgattttgtaaaattgattctagctaaaaatgaattgaaggtaaagtgaattatgtt 10618937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 26627193 - 26627225
Alignment:
Q  62 ttgattttgaatgaatttattttgtagaattga 94  Q
    |||||||||||||||||||||||||| ||||||    
T  26627193 ttgattttgaatgaatttattttgtaaaattga 26627225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 37420317 - 37420357
Alignment:
Q  186 ccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||||||||||||||||| |||||||| | ||||||||    
T  37420317 ccaaacatgtcaaaatcaattctacacctctagaatcaatt 37420357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 40704754 - 40704682
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgattta 130  Q
    ||||||||||||||||||||| ||| |||  ||||||||||  || ||| | | ||||||||||| |||||||    
T  40704754 aaaattgattttgaatgaattgattatgtgaaattgattttggttaaaatttatttgaatgtaaattgattta 40704682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 5231 - 5155
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgatttt-acttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||||||||||| ||||||||| |||||||||| |||| ||| ||||| ||||||||| |||||||||||    
T  5231 aaaattgattttgaatgaatctattttgtaaaattgatttttacttaaaa-tgactcgaatgtaaaatgatttatgtt 5155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 2868324 - 2868405
Alignment:
Q  50 acagtgacaaaa-ttgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgattta 130  Q
    |||||||||||| ||||||||    ||||| |||||||||||||||||||| || ||||||| |||||||||||||||||||    
T  2868324 acagtgacaaaaattgattttagtagaattaattttgtagaattgattttagttaaaagtgagttgaatgtaaagtgattta 2868405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 7637494 - 7637545
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacacctccataatcaattatg 229  Q
    |||||||| |||||||||||||||||||||||||| |||| |||||||||||    
T  7637494 gagagcaatcaaacatgtcaaaatcaattttacacatccagaatcaattatg 7637545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 39097232 - 39097189
Alignment:
Q  183 caaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  39097232 caaccaaacatgtcaaaatcaattctacacctctataatcaatt 39097189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 12404997 - 12405039
Alignment:
Q  184 aaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||||||||||||||||||| ||||||| |||||||||||    
T  12404997 aaccaaacatgtcaaaatcaattatacaccttcataatcaatt 12405039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 11648057 - 11648004
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaattttacacctccataatcaattatg 229  Q
    |||| ||||| |||||||||||||||||||| |||||| ||| |||||||||||    
T  11648057 tcgacagcaatcaaacatgtcaaaatcaattatacaccaccaaaatcaattatg 11648004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 22811131 - 22811082
Alignment:
Q  85 gtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||||  || ||||||| |||||||||||||||||||||||    
T  22811131 gtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtt 22811082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 19784944 - 19784869
Alignment:
Q  60 aattgattttgaatgaatttattttgta-gaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||| |||||| ||||| |  |||||||||||  || ||||||| |||||||||||||| ||||||||    
T  19784944 aattgattttgattgaattgattttatttgaattgattttggttaaaagtgagttgaatgtaaagtggtttatgtt 19784869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 16293996 - 16294042
Alignment:
Q  180 gagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||||||||||||||| |||||||||| ||||| || ||||||||||    
T  16293996 gagcaaccaaacatgttaaaatcaattctacacttctataatcaatt 16294042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 3043119 - 3043164
Alignment:
Q  181 agcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||||| ||||||||||||||||||| |||||||| | ||||||||    
T  3043119 agcaactaaacatgtcaaaatcaattctacacctctagaatcaatt 3043164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 10957198 - 10957242
Alignment:
Q  89 aattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||| || ||||||||||||||||||| |||||||||||    
T  10957198 aattgattttagttaaaagtgacttgaatgtaaa-tgatttatgtt 10957242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 22226353 - 22226398
Alignment:
Q  183 caaccaaacatgtcaaaatcaattttacacctccataatcaattat 228  Q
    ||||||||||||||| |||||||| ||||| |||| ||||||||||    
T  22226353 caaccaaacatgtcagaatcaattctacacgtccaaaatcaattat 22226398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 29922869 - 29922833
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaattttacac 212  Q
    |||||| |||||||||||||||||||||||| |||||    
T  29922869 tcgagaacaaccaaacatgtcaaaatcaattctacac 29922833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 23701 - 23753
Alignment:
Q  174 attcgagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||||||||    
T  23701 attcgagggcaaccaaacatgtcaaaataaactttacacctccataatcaatt 23753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 3605731 - 3605810
Alignment:
Q  55 gacaaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||||||||   |||| |||||||||||||||||||  || ||||||| |||| || |||||||||||||||    
T  3605731 gacaaaattgattttgatataattgattttgtagaattgattttgattaaaagtgagttgagtgaaaagtgatttatgtt 3605810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 33136593 - 33136632
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaattttacacctc 215  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  33136593 tcgagagcaaccaaacatgtcaaaatcaattatacacctc 33136632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 1500074 - 1499998
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||||| |||||| |||||||| ||||||||||   | |||| || |||| |||||| |||||||||||    
T  1500074 aaaattgattttgactgaattgattttgtaaaattgattttggctaaaagcgagttgagtgtaaattgatttatgtt 1499998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 26550487 - 26550447
Alignment:
Q  183 caaccaaacatgtcaaaatcaattttacacctccataatca 223  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  26550487 caaccaaacatgtcaaaatcaattctacacctctataatca 26550447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 2002582 - 2002625
Alignment:
Q  183 caaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||    
T  2002582 caaccaaacatgtcaaaatcaattctacgcctccaaaatcaatt 2002625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 7952830 - 7952869
Alignment:
Q  187 caaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  7952830 caaacatgtcataatcaattttacacctccataattaatt 7952869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 10054969 - 10055051
Alignment:
Q  53 gtgacaaaa-ttgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||| |||||||||||||||||  ||||||| ||||||| ||| || ||| ||| |||  ||||||||| ||||||||    
T  10054969 gtgacaaaagttgattttgaatgaattggttttgtaaaattgatattagttaaaattgagttgcttgtaaagtggtttatgtt 10055051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 25195474 - 25195524
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||| ||||||||||||||||| |||||||| ||||| |||| ||||||||    
T  25195474 tcgatagcaaccaaacatgtcagaatcaattatacacatccagaatcaatt 25195524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 33141819 - 33141853
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacac 212  Q
    |||||||||||||||| ||||||||||||||||||    
T  33141819 gagagcaaccaaacatatcaaaatcaattttacac 33141853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 2234158 - 2234195
Alignment:
Q  88 gaattgattttacttgaaagtgacttgaatgtaaagtg 125  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  2234158 gaattgattttacttaaaagtgagttgaatgtaaagtg 2234195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 6885904 - 6885965
Alignment:
Q  54 tgacaaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttga 115  Q
    |||||||||||||| ||||||| || ||||||| ||| |||||||| || ||||||| ||||    
T  6885904 tgacaaaattgattctgaatgagttgattttgttgaactgattttaattaaaagtgagttga 6885965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 25208769 - 25208724
Alignment:
Q  89 aattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||| || ||||||| ||||||||||| |||||||||||    
T  25208769 aattgattttaattaaaagtgagttgaatgtaaaatgatttatgtt 25208724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 29240575 - 29240612
Alignment:
Q  189 aacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  29240575 aacatgtcaaaatcaattttacacctctagaatcaatt 29240612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 4080392 - 4080432
Alignment:
Q  187 caaacatgtcaaaatcaattttacacctccataatcaatta 227  Q
    ||||||||||||||||||||||||||||  | |||||||||    
T  4080392 caaacatgtcaaaatcaattttacacctttagaatcaatta 4080432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 9043722 - 9043774
Alignment:
Q  65 attttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaat 117  Q
    ||||| |||||||| |||||||| ||||||||||| || ||||||| ||||||    
T  9043722 atttttaatgaattgattttgtataattgattttagttaaaagtgagttgaat 9043774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 13428858 - 13428926
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgatttt-acttgaaagtgacttgaatgtaaagtg 125  Q
    |||||||||| ||||| |||  |||||||| |||||||||| | || ||||||| ||||||||||||||    
T  13428858 aaaattgattgtgaataaatgaattttgtaaaattgatttttagttaaaagtgatttgaatgtaaagtg 13428926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 31305964 - 31305996
Alignment:
Q  180 gagcaaccaaacatgtcaaaatcaattttacac 212  Q
    ||||||||||||||||||||||||||| |||||    
T  31305964 gagcaaccaaacatgtcaaaatcaattctacac 31305996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 42644379 - 42644304
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaa-ttgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||| |||||| ||||| || || ||||||||| || ||||||| |||||||||||||||||||||||    
T  42644379 aattgattttgagtgaattgattttataaaaattgattttagttaaaagtgagttgaatgtaaagtgatttatgtt 42644304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 48089499 - 48089549
Alignment:
Q  176 tcgagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||||    
T  48089499 tcgagagcaaccaaacatgccaaaatcaattttacacttccaaaatcaatt 48089549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 39657981 - 39658057
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||||||| |||| ||| |||| |||||||||||||| |||||   ||||||||||| | |||||||||    
T  39657981 aaaattgattttgaataaattgattatgtaaaattgattttacttaaaagttcgttgaatgtaaaataatttatgtt 39658057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 44225683 - 44225607
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||| |   |||| |||||||||||||||||||  || ||||||| || ||||||||||||||||||||    
T  44225683 aaaattgattttaatataattgattttgtagaattgattttcgttaaaagtgagtttaatgtaaagtgatttatgtt 44225607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 52925723 - 52925771
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||||||||||||||||||||||||| |||||||| | ||||||||    
T  52925723 gagagcaaccaaacatgtcaaaatcaattatacacctctagaatcaatt 52925771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 25181326 - 25181252
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||| |||| |||||| |||||||||||||||||||  || ||||||| || |||||||| | |||||||||    
T  25181326 aattgatattgattgaattgattttgtagaattgattttgattaaaagtgagtttaatgtaaaattatttatgtt 25181252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 31766160 - 31766234
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||||||||| |||||||| |||| |||||   | ||||||| |||||  ||||||||||||||||    
T  31766160 aattgattttgaatgaattgattttgtaaaattaattttggataaaagtgagttgaagttaaagtgatttatgtt 31766234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 7012731 - 7012682
Alignment:
Q  85 gtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||||  || ||||||| |||||||||||||||||||||||    
T  7012731 gtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtt 7012682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 53078476 - 53078435
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgatttta 99  Q
    |||||||||||||| |||||| ||||||||||||||||||||    
T  53078476 aaaattgattttgattgaattaattttgtagaattgatttta 53078435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 30958209 - 30958145
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagt 124  Q
    ||||||||||||||||||| |||||||| ||||||||||   | || |||| |||||||||||||    
T  30958209 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagt 30958145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 30974021 - 30973957
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagt 124  Q
    ||||||||||||||||||| |||||||| ||||||||||   | || |||| |||||||||||||    
T  30974021 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagt 30973957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 49158693 - 49158621
Alignment:
Q  59 aaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttat 131  Q
    |||||||||||||||||||| |||||||| ||||||||| |  | ||||||||| |||| |||  ||||||||    
T  49158693 aaattgattttgaatgaattgattttgtaaaattgatttaagataaaagtgactagaatataagatgatttat 49158621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 53568050 - 53567974
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||||| |||||| |||||  | ||||||||||  || ||||||| ||||||| ||||| |||||||||    
T  53568050 aaaattgattttgagtgaattgattttacaaaattgattttgattaaaagtgagttgaatgaaaagtaatttatgtt 53567974  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 3776511 - 3776464
Alignment:
Q  179 agagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||| ||||||||||||||||||||||| |||||||| |||| |||||    
T  3776511 agaggaaccaaacatgtcaaaatcaattctacacctctataaccaatt 3776464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 836129 - 836166
Alignment:
Q  187 caaacatgtcaaaatcaattttacacctccataatcaa 224  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  836129 caaacatgtcaaaatcaattttacacatccaaaatcaa 836166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 10852727 - 10852772
Alignment:
Q  89 aattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||  || ||||||| |||||||||||||||||||||||    
T  10852727 aattgattttggttaaaagtgagttgaatgtaaagtgatttatgtt 10852772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 23918933 - 23918884
Alignment:
Q  85 gtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||| |||||  || ||||||| |||||||||||||||||||||||    
T  23918933 gtagaattaattttggttaaaagtgagttgaatgtaaagtgatttatgtt 23918884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 27825291 - 27825328
Alignment:
Q  59 aaattgattttgaatgaatttattttgtagaattgatt 96  Q
    |||||||||||||||||||||||||| || ||||||||    
T  27825291 aaattgattttgaatgaatttattttataaaattgatt 27825328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 44958718 - 44958755
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacacctc 215  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  44958718 gagagcaaccaaacatgtcagaatcaattctacacctc 44958755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 3845224 - 3845272
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||| ||| |||||||||||||||||||| |||||||| | ||||||||    
T  3845224 gagatcaaacaaacatgtcaaaatcaattctacacctctagaatcaatt 3845272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 7262871 - 7262823
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||||||||||||||||||| |||||||| | |||||| | ||||||||    
T  7262871 gagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaatt 7262823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 35264520 - 35264560
Alignment:
Q  175 ttcgagagcaaccaaacatgtcaaaatcaattttacacctc 215  Q
    ||||||||||||||||||||| | |||||||||||| ||||    
T  35264520 ttcgagagcaaccaaacatgtgagaatcaattttactcctc 35264560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 54596786 - 54596754
Alignment:
Q  183 caaccaaacatgtcaaaatcaattttacacctc 215  Q
    ||||||||||||||| |||||||||||||||||    
T  54596786 caaccaaacatgtcataatcaattttacacctc 54596754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 36779515 - 36779441
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||   |||| |||||||||||||||||||  || ||||||| ||||||||||||| |||||||||    
T  36779515 aattgattttgatataattgattttgtagaattgattttgattaaaagtgagttgaatgtaaagtaatttatgtt 36779441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 38715191 - 38715268
Alignment:
Q  57 caaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||| | |||||| |||||| ||||||||||||| || ||| ||| || | ||||||||||||||||||    
T  38715191 caaaattgattttaattgaattgattttgcagaattgattttagttaaaattgagttaagtgtaaagtgatttatgtt 38715268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 29970928 - 29970852
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||||  ||||| | |||||| ||||||||||| || ||||||| |||| | ||||||||||||||||    
T  29970928 aaaattgattttgatagaattgaatttgtataattgattttagttaaaagtgagttgagtttaaagtgatttatgtt 29970852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 38516416 - 38516348
Alignment:
Q  66 ttttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||| |||||| |||||||||||||||||||   | | ||||| |||||||||||||||||||||||    
T  38516416 ttttgagtgaattgattttgtagaattgattttcgataatagtgagttgaatgtaaagtgatttatgtt 38516348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 1836124 - 1836199
Alignment:
Q  59 aaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||| | |||| |||||||||||||||||||| |  ||||||  |||||||| |||| |||||||||    
T  1836124 aaattgattttgattaaattgattttgtagaattgattttaatctaaagtgggttgaatgtgaagttatttatgtt 1836199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 2031907 - 2031982
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgt 133  Q
    ||||||||||||||| |||||||||||||| |||| |||||| || ||||  |||| ||||||||||  |||||||    
T  2031907 aaaattgattttgaaagaatttattttgtaaaatttattttatttaaaagaaacttaaatgtaaagttgtttatgt 2031982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 13384771 - 13384817
Alignment:
Q  183 caaccaaacatgtcaaaatcaattttacacctccataatcaattatg 229  Q
    ||||||||||||||| |||||||| |||||||||| |||||||||||    
T  13384771 caaccaaacatgtcagaatcaattctacacctccaaaatcaattatg 13384817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 41408316 - 41408258
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaa 116  Q
    |||||||||||||| |||||| |||||||||||||||||||| ||  |||||| |||||    
T  41408316 aaaattgattttgattgaattaattttgtagaattgattttagttagaagtgaattgaa 41408258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 42455882 - 42455837
Alignment:
Q  181 agcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||    
T  42455882 agcaaccaaacatgtcaaaatcaattctactgctccataatcaatt 42455837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 20169545 - 20169493
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtga 110  Q
    |||||| |||||||||||||| ||| |||||||||||||||| || |||||||    
T  20169545 aaaatttattttgaatgaattgattatgtagaattgattttagttaaaagtga 20169493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 35550347 - 35550271
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||||| |||||| |||||||| ||||||||||  |  ||||||| || | ||||||||||||| ||||    
T  35550347 aaaattgattttgattgaattgattttgtaaaattgatttttatcaaaagtgagtttagtgtaaagtgatttttgtt 35550271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 31246299 - 31246374
Alignment:
Q  60 aattgattttgaatgaatttattttgt-agaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||  ||||| ||||||| ||||||||||||  || ||||||| |||||||| || |||||||||||    
T  31246299 aattgattttgacagaattgattttgttagaattgatttttgttaaaagtgagttgaatgtgaattgatttatgtt 31246374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 10368137 - 10368063
Alignment:
Q  60 aattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    |||||||||||| ||||||  ||||||| ||||||||||   | ||||||| ||||| |||||||||||| ||||    
T  10368137 aattgattttgagtgaattgtttttgtaaaattgattttgagtaaaagtgagttgaaggtaaagtgatttgtgtt 10368063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 15677904 - 15677958
Alignment:
Q  172 ctattcgagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||| || ||||||||||||||||| |||||||| |||| ||||| ||||||||    
T  15677904 ctatttgaaagcaaccaaacatgtcagaatcaattgtacaactccacaatcaatt 15677958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 5859180 - 5859225
Alignment:
Q  181 agcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||||| |||||| ||| ||||||||||||||||||||||| ||||    
T  5859180 agcaactaaacatatcagaatcaattttacacctccataattaatt 5859225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 19649281 - 19649236
Alignment:
Q  89 aattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||  || ||||||| |||||||||||||||||||||||    
T  19649281 aattgattttggttaaaagtgagttgaatgtaaagtgatttatgtt 19649236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 41891802 - 41891843
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgatttta 99  Q
    |||||| ||||||| |||||| ||||||||||||||||||||    
T  41891802 aaaattaattttgattgaattgattttgtagaattgatttta 41891843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 4554307 - 4554259
Alignment:
Q  178 gagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    ||||||||| |||  ||||||||||||||||||||||| | ||||||||    
T  4554307 gagagcaactaaatgtgtcaaaatcaattttacacctctagaatcaatt 4554259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 11038159 - 11038107
Alignment:
Q  174 attcgagagcaaccaaacatgtcaaaatcaattttacacctccataatcaatt 226  Q
    |||||||| || ||||||||||||||||||||| || ||||| | ||||||||    
T  11038159 attcgagaacatccaaacatgtcaaaatcaattatatacctctagaatcaatt 11038107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 15240 - 15316
Alignment:
Q  58 aaaattgattttgaatgaatttattttgtagaattgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 134  Q
    ||||||||||||||  ||||| |||||||  ||||||||||  || ||||||| |||||| ||||||||||||||||    
T  15240 aaaattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgtt 15316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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