View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_23 (Length: 386)
Name: NF4012_low_23
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 6085348 - 6085698
Alignment:
| Q |
19 |
gaaacatagaatggcacttacggatgcagaaagtgttcaaagagccaggctctaagaacagtcacagcacgctcggggagtcctctttgaggtcgccata |
118 |
Q |
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| T |
6085348 |
gaaacatagaatggcacttacggatgcagaaagtgttcaaagagccaggctctaagaacagtcacagcacgctcggggagtcctctttgaggtcgccata |
6085447 |
T |
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| Q |
119 |
caggttgttgctgctcaagataacctgacctatggctgtaaggtcctcctctttcactattgccgaatctaggagattcttccttccggttgcttgtgtg |
218 |
Q |
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| T |
6085448 |
caggttgttgctgctcaagataacctgacctatggctgtaaggtcctcctctttcactattgccaaatctaggagattcttccttccggttgcttgtgtg |
6085547 |
T |
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| Q |
219 |
aaaatgcaccttattattgaactgtagttgatcagtaattgccttcttcaagcatctaaaatgtttggacatagcttttatcgccaaacttgcataagga |
318 |
Q |
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| T |
6085548 |
aaaatgcgccttattattgaactgtagttgatcagtaattgccttcttcaagcatctaaaatgtttggacatagcttttatcgccaaacttgcataagga |
6085647 |
T |
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| Q |
319 |
gctgcattgttgagaccagaaacatactcaaatgatgtcacgaccgattgc |
369 |
Q |
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| T |
6085648 |
gctgcattgttgagaccagaaacatactcaaatgatgtcacaaccgattgc |
6085698 |
T |
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Back To:
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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 23674203 - 23674298
Alignment:
| Q |
33 |
cacttacggatgcagaaagtgttcaaagagccaggctctaagaacagtcacagcacgctcggggagtcctctttgaggtcgccatacaggttgttg |
128 |
Q |
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| T |
23674203 |
cacttacggatgcaaaaagtgttcaaacaaccatcccctaagaacactgacagcacgctcgggcaaccctctttgaggtcgccaaacaggttgttg |
23674298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 23674432 - 23674493
Alignment:
| Q |
262 |
ttcttcaagcatctaaaatgtttggacatagcttttatcgccaaacttgcataaggagctgc |
323 |
Q |
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| T |
23674432 |
ttcttcaagaatctaaaatgtttggacatggcatttatagccaaacttgcatacggagctgc |
23674493 |
T |
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