View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_24 (Length: 373)
Name: NF4012_low_24
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 23 - 357
Target Start/End: Complemental strand, 184458 - 184124
Alignment:
| Q |
23 |
agaattctcctggacgttcttttcaagcattgcacttgcactggccttcttcacatctttcttatgtacacgacctatagcgctgacaggaatattcact |
122 |
Q |
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| T |
184458 |
agaattctcctggacgttcttttcaagcattgctcttgcactggccttcttcacatctttcttatgtacatgatctatagcactgacaggaatattaact |
184359 |
T |
|
| Q |
123 |
tctggagttttcttaaaattcaatactcctcctttcaataatgagccaggcattgtagcctgaacataaatgctctcgccactcctctcaaacctgctca |
222 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
184358 |
tctggagttttcttaaaattcattactcctcttttcaataatgagccaggtattgtagcctgaacataaatgctctcgccactcctctcaaacctgctca |
184259 |
T |
|
| Q |
223 |
agaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcaggtttcaccacatataaactagagccagcaatagcatgttcaag |
322 |
Q |
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| T |
184258 |
agaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcaggcttcaccacatataaactagagccagcaatagcatgttcaag |
184159 |
T |
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| Q |
323 |
tccctacaataacaggaaatcttatcaaatctctg |
357 |
Q |
| |
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| T |
184158 |
tccctacaataacaggaaatcttatcaaatctctg |
184124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 215 - 356
Target Start/End: Original strand, 590090 - 590231
Alignment:
| Q |
215 |
cctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcaggtttcaccacatataaactagagccagcaatagca |
314 |
Q |
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| T |
590090 |
cctgctcaagactgactccacatcttccatggccacttgtttaacatattccaaatcatcatcaggcttcaccaaatataaactagcaccagcaatagca |
590189 |
T |
|
| Q |
315 |
tgttcaagtccctacaataacaggaaatcttatcaaatctct |
356 |
Q |
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| T |
590190 |
tgttcaagtccctgcaataacaggaaatcttatcaaatctct |
590231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 3015000 - 3014935
Alignment:
| Q |
39 |
ttcttttcaagcattgcact----tgcactggccttcttcacatctttcttatgtacacgacctat |
100 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||| |||||||||| | ||||||| |
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| T |
3015000 |
ttcttttcaagcattgcactggcttgcactggccttctccacatccttcttatgtataggacctat |
3014935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 180 - 355
Target Start/End: Complemental strand, 44607446 - 44607271
Alignment:
| Q |
180 |
gcctgaacataaatgctctcgccactcctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcag |
279 |
Q |
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||||| ||| ||| || ||| |||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||| ||||| |||||||||| || |
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| T |
44607446 |
gcctggacacaaacgccctcaccactcctgtcaatcctgctcaagactgactccacgtcttccaaggctgcttttttaatatatttcaaatcatcattag |
44607347 |
T |
|
| Q |
280 |
gtttcaccacatataaactagagccagcaatagcatgttcaagtccctacaataacaggaaatcttatcaaatctc |
355 |
Q |
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| T |
44607346 |
gcttcaccacatgtaaactagcgccagcaacagcgtgttcaagtccctgaaataacaggaaatcttatcaaatctc |
44607271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 180 - 327
Target Start/End: Complemental strand, 44628952 - 44628805
Alignment:
| Q |
180 |
gcctgaacataaatgctctcgccactcctctcaaacctgctcaagaccgactccacgtcttccaaggccgcttttttaaaatattctaaatcatcatcag |
279 |
Q |
| |
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||||| ||| ||| || ||| |||||||| |||| |||||||||||||||||||||||||||||| || |||||||||| |||||| ||||||||||||| |
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| T |
44628952 |
gcctggacacaaacgccctcaccactcctgtcaatcctgctcaagaccgactccacgtcttccaaagctgcttttttaatatattccaaatcatcatcag |
44628853 |
T |
|
| Q |
280 |
gtttcaccacatataaactagagccagcaatagcatgttcaagtccct |
327 |
Q |
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| || |||||||||||||||| |||||||||||||||||||| |||| |
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| T |
44628852 |
gctttaccacatataaactagctccagcaatagcatgttcaagcccct |
44628805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 44629028 - 44628992
Alignment:
| Q |
98 |
tatagcgctgacaggaatattcacttctggagttttc |
134 |
Q |
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|||||| || ||||||||||||||||||||||||||| |
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| T |
44629028 |
tatagcactaacaggaatattcacttctggagttttc |
44628992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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