View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_26 (Length: 369)
Name: NF4012_low_26
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 29 - 275
Target Start/End: Complemental strand, 10251338 - 10251078
Alignment:
| Q |
29 |
ttcgaaatcatgcctaaagaggaactcaatgagtggaaactagtaaaatattatcccaaatcatccaatagttagttggtaaaaagctacaatgttagaa |
128 |
Q |
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| T |
10251338 |
ttcgaaatcatgcctaaagaggagctcaatgagtagaaactagtaaaatattatctcaaatcatccaatagtt----ggtaaaaagctacaatgttagaa |
10251243 |
T |
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| Q |
129 |
tgtaaatagcatgtttggtatcagagtagtttatattatgatttttcaaaagctataaagtgtattttttacaaaatta-------------cgatttcc |
215 |
Q |
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| T |
10251242 |
tgtaaatagcatgtttggtatcatagtagtttatgttatgatttttcaaaagctataaagtgtattttttacaaaattatgatgtctcatcctgattttc |
10251143 |
T |
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| Q |
216 |
aaaaatcgatg-----taatacgaaatataagtagtaaataaaatgtcattatcatccatgagct |
275 |
Q |
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| T |
10251142 |
aaaaatcgatgtaatataataccaaatataagtagtaaataaaatgtgattatcatccatgagct |
10251078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 10251044 - 10250968
Alignment:
| Q |
272 |
agcttagacactattgtctagtgtacacacagtctattatcaatattgggctaagcagataatcaaaatagatagat |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |
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| T |
10251044 |
agcttagacactattgtctagtgtacacacagtctattatctatattgggctaagcagataatcaaattaaatagat |
10250968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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