View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_28 (Length: 357)
Name: NF4012_low_28
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 337
Target Start/End: Original strand, 11585717 - 11586029
Alignment:
| Q |
16 |
cttacctctagtactaaattaatttaccttaattttgtttccaatatcaaaaggacttgagcattgaaaggaaattccactgaaaaaatttccaacctca |
115 |
Q |
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| T |
11585717 |
cttacatctagtactaaattaatttaccttaattttgtttccaatatcaaaaggacttgagcattgaaaggaaattccactgaaaaattttccatcctca |
11585816 |
T |
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| Q |
116 |
ctaatatccaaagcaccactggcagctcctaggaaaatagaaatattgaataaattatcatcagattctctttaaaatttaactcgtacattagattttt |
215 |
Q |
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| T |
11585817 |
ctaatacccaaaacac----------ttctagaaaaatagaaatattgaataaattatcatcagattctctttaaaatttaacttgtacattagattttt |
11585906 |
T |
|
| Q |
216 |
attacgtacctctaatccctccaattgataaaacaagatagcaatgctcagtcaaag-cagtgttgctagcagccatactccaatagatgatgcattttc |
314 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||| ||||||| |||||||||| |
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| T |
11585907 |
attacgtacctgaaatccctccaattgataaaacaagatagcaatgctcagtcaaagccagtgctactagcagccatacttcaatagaatatgcattttc |
11586006 |
T |
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| Q |
315 |
ctatacaaccatgtaacctctat |
337 |
Q |
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| || ||||||||| || ||||| |
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| T |
11586007 |
caatgcaaccatgttacttctat |
11586029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 337
Target Start/End: Original strand, 11589129 - 11589436
Alignment:
| Q |
22 |
tctagtactaaattaatttaccttaattttgtttccaatatcaaaaggacttgagcattgaaaggaaattccactgaaaaaatttccaacctcactaata |
121 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11589129 |
tctagtactaaattaatttaccttaattttgttttcaatttcaaaaggacttgagcattgaaaggaaattccactgaaaaaatttccaacctcactaata |
11589228 |
T |
|
| Q |
122 |
tccaaagcaccactggcagctcctaggaaaatagaaatattgaataaattatcatcagattctctttaaaatttaactcgtacattagatttttattacg |
221 |
Q |
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| T |
11589229 |
cccaaagcaccactgacagttcatagaaaaatagaaatattgaataaattataatcaaattctctttaaaatttaactcgcacattagatttttattacg |
11589328 |
T |
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| Q |
222 |
tacctctaatccctccaattgataaaacaagatagcaatgctcagtcaaag-cagtgttgctagcagccatactccaatagatgatgcattttcctatac |
320 |
Q |
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| T |
11589329 |
ta---------cctccaattgataaaacaagatagcaatgatatgtcaaagccagtgctgctagcagccatactctaatagatgatgcatttttcaatgc |
11589419 |
T |
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| Q |
321 |
aaccatgtaacctctat |
337 |
Q |
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| T |
11589420 |
aaccatgtaacttctat |
11589436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 11919705 - 11919787
Alignment:
| Q |
164 |
aataaattatcatcagattctctttaaaatttaactcgtacattagatttttattacgtacctctaatccctccaattgataaaa |
248 |
Q |
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| T |
11919705 |
aataagttatcatcatattct-tctaacatttaac-cgtatattagatttttattacgtacctccaatcgctccaattgagaaaa |
11919787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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