View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4012_low_29 (Length: 355)
Name: NF4012_low_29
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 32785048 - 32785378
Alignment:
| Q |
19 |
cttaggccatgcaaaaataaataaataaacttccacggcattcctctcaattccggaaatagtccacatggacatggcaagggggcgggtataagttttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
32785048 |
cttaggccatgcaaaaataaataaataaacttccacggcattcctctcaattccggaaatagtccatatagacatggcaacggggcgggtataagttttg |
32785147 |
T |
|
| Q |
119 |
cctaccccattcccaactttgatggagttggttatccctgtctccaatttcaagaaagatgaaaaatataaccttagatataatggggttcgagtatccc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32785148 |
cctaccccattcccaactttgatggagttggttatccctgtctccaatttcaagaaagatgaaaaatataaccttagatataatggggttcgagtatccc |
32785247 |
T |
|
| Q |
219 |
catccagtctcgcatgaacttagattcatttttgtac---nnnnnnnnnngttattaaaaacagtatatcaaaattacgtggattcaacaatcccattta |
315 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
32785248 |
catccaatctcgcatgaacttagattcatttttgtacttttttttttttttttattaaaaacagtatatcaaaattacgtcgattcaacaatctcattta |
32785347 |
T |
|
| Q |
316 |
aaataataatcaaaaatagaggaaacaattt |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32785348 |
aaataataatcaaaaatagaggaaacaattt |
32785378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University