View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4012_low_3 (Length: 657)
Name: NF4012_low_3
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_3 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 41415910 - 41415600
Alignment:
| Q |
7 |
agcagaacctgtgcaaagacaaaaagaaaacgtgacacataagtagggagaaacgtgggatgtcatgcggttacaaggggtagaaatgaacttttcagat |
106 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41415910 |
agcaaaacctgtgtaaagacaagaagaaaacgtaacacataagtaggtagaaacgtgggatgccatgcggttacaaggggtagaaatgaacttttgagat |
41415811 |
T |
|
| Q |
107 |
attaatggatgttaaccgctgggaataagtcattcccatcctttgtgctgggaattaaaaatgggataatatagttaaaaataattaccgggtataatta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41415810 |
attaatggatgttaaccgctgggaataagtcattcccatcctttgtgctgggaataaaaaatgggagaatatagttaaaaataattaccgggtataatta |
41415711 |
T |
|
| Q |
207 |
attccttggaacctttttgtatgcatgtgttccaaacattggaataaatagttcccatcttacattcccaggaacttaatttgtagaggggaaacaaacg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41415710 |
attccttggaacctttttgtatgcatgtgtaccaaacattgcaataaatagttcccatcttacattcccaggaacttattttgtagaggggaaacaaacg |
41415611 |
T |
|
| Q |
307 |
ccccctaagat |
317 |
Q |
| |
|
|||||| |||| |
|
|
| T |
41415610 |
cccccttagat |
41415600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 189 - 310
Target Start/End: Original strand, 55447916 - 55448037
Alignment:
| Q |
189 |
aattaccgggtataattaattccttggaacctttttgtatgcatgtgttccaaacattggaataaatagttcccatcttacattcccaggaacttaattt |
288 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||||| ||| |
|
|
| T |
55447916 |
aattaccgggtataattaattccttataacctttttttatgcatgtgtatcaaacattggaataaatagttcctatcttacattctcagaaacttatttt |
55448015 |
T |
|
| Q |
289 |
gtagaggggaaacaaacgcccc |
310 |
Q |
| |
|
||||| | |||||||||||||| |
|
|
| T |
55448016 |
gtagaagtgaaacaaacgcccc |
55448037 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 55447702 - 55447896
Alignment:
| Q |
7 |
agcagaacctgtgcaaagacaaaaagaaaacgtgacacataagtagggagaaacgtgggatgtcatgcggttac--aaggggtagaaatgaacttttcag |
104 |
Q |
| |
|
|||| |||||||| |||| || ||||||||||| ||||||| |||| ||| ||||||| || |||| ||||| || ||||||||||||| |||| | |
|
|
| T |
55447702 |
agcaaaacctgtgtaaaggcaggaagaaaacgtggcacataaataggcagagacgtggggtg--atgcagttacttaaagggtagaaatgaaattttgtg |
55447799 |
T |
|
| Q |
105 |
atatt-aatggatgttaaccgctgggaataagtcattcccatcctttgtgctgggaattaaaaatgggataatatagttaaaaataattaccgggtata |
202 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||| |||||||||||| |||||| |||||||||| |||||||| |
|
|
| T |
55447800 |
acatttaatggatgttaaccgctgggaataagtgattcccatcctttgggttgggaataaaaaatgggata--atagttgaaaataattatcgggtata |
55447896 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 24565440 - 24565335
Alignment:
| Q |
207 |
attccttggaacctttttgtatgcatgtgttccaaacattggaataaatagttcccatcttacattcccaggaacttaatttgtagaggggaaacaaacg |
306 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||||||| |||||||||| ||||||||||| ||||| ||||| |||||| ||||| ||||||||| |
|
|
| T |
24565440 |
attccttggaatatttttgtatgcatgtataccaaacataggaataaataattcccatcttagattcctaggaatctaatttacagaggtgaaacaaaca |
24565341 |
T |
|
| Q |
307 |
ccccct |
312 |
Q |
| |
|
|||||| |
|
|
| T |
24565340 |
ccccct |
24565335 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 312 - 630
Target Start/End: Complemental strand, 19578062 - 19577736
Alignment:
| Q |
312 |
taagatattgaataattttgttgtcttctacgatgtttggtgaaccnnnnnnntaaacgggttcaattttaagagcttgatttaattttattatttttaa |
411 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19578062 |
taagatattgaataatttt-ttgtcttctacgatgtttgatgaaccaaaaa---aaacgggttcaattttaagagcttgatttaattttattatttttaa |
19577967 |
T |
|
| Q |
412 |
taactaagactaaaattctttgtcaaagaaaaatgaaaaacaactaactaaaatctagagagttaaaatttgaagagcaggatccatagtcagtcaatag |
511 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19577966 |
taactacgactaaaattctttgtcaaagaaaaatgaaaaacagctaactaaaatctagagagttaaaatttgaagagcacgatccatagtcagtcaatag |
19577867 |
T |
|
| Q |
512 |
------------tcaatccaagatcacacccattcccttacgatacatccctccacaccatatcccctccctcaccgcgtgtcaaagtcatcatgaatta |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19577866 |
tcaacagtcatgtcaatccaagatcacacccattcccttacgatacatccctccacaccatatcccctccctcaccgcgtgtcaaagtcatcatgaatta |
19577767 |
T |
|
| Q |
600 |
atcactttcattcaaatccaaatccaaatcc |
630 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
19577766 |
atcactttcattcaaatccaaatccaaatcc |
19577736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 207 - 305
Target Start/End: Original strand, 46194021 - 46194119
Alignment:
| Q |
207 |
attccttggaacctttttgtatgcatgtgttccaaacattggaataaatagttcccatcttacattcccaggaacttaatttgtagaggggaaacaaac |
305 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||||||| ||||||||| ||||||||||| ||||| | ||| |||||| ||||| ||||||||| |
|
|
| T |
46194021 |
attccttggaatatttttgtatgcatgtataccaaacataagaataaataattcccatcttagattcctaagaatctaatttacagaggtgaaacaaac |
46194119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 36366864 - 36366969
Alignment:
| Q |
207 |
attccttggaacctttttgtatgcatgtgttccaaacattggaataaatagttcccatcttacattcccaggaacttaatttgtagaggggaaacaaacg |
306 |
Q |
| |
|
|||||||| || ||||||||||||||| | |||||||| |||||||||| ||| ||||||| ||||| ||||| |||||| |||| ||||||||| |
|
|
| T |
36366864 |
attccttgaaatatttttgtatgcatgtataccaaacataggaataaataattctcatcttagattcctaggaatctaatttactgaggtgaaacaaaca |
36366963 |
T |
|
| Q |
307 |
ccccct |
312 |
Q |
| |
|
|||||| |
|
|
| T |
36366964 |
ccccct |
36366969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 41418229 - 41418503
Alignment:
| Q |
7 |
agcagaacctgtgcaaagacaaaaagaaaacgtgacacataagtagggagaaacgtgggatgtcatgcggttacaaggggtagaaatgaacttttcagat |
106 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41418229 |
agcaaaacctatgtaaagacaaaaagaaaacgtgacacataagtag----aaatgtgggatgccatgcggttacaaggggtagaaatgaacttttgagat |
41418324 |
T |
|
| Q |
107 |
attaatggatgttaaccgctgggaataagtcattcccatcctttgtgctgggaattaaaaatgggataatatagttaaaaataattaccgggtataatta |
206 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41418325 |
attaatggatgttaactgcttggaataagtcattcccatcctttctgttgggaataaaatatgggataatatagttaaaaataattaccggatataatta |
41418424 |
T |
|
| Q |
207 |
attccttggaacctttttgtatgcatgtgttccaaacattggaataaatagttcccatcttacattcccaggaacttaa |
285 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41418425 |
atttcttggaacctttttgtatgcatgtgtaccaaatattggaataaatagttcccatcttacattcccaggaacttaa |
41418503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 45355342 - 45355251
Alignment:
| Q |
200 |
ataattaattccttggaacctttttgtatgcatgtgttccaaacattggaataaatagttcccatcttacattcccaggaacttaatttgta |
291 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||||| | |||||||| |||||||||| ||||||||||| ||||| |||| | |||||||| |
|
|
| T |
45355342 |
ataattcattccttggaatatttttgtgtgcatgtctaccaaacatgggaataaataattcccatcttagattcctgggaattcaatttgta |
45355251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 291
Target Start/End: Complemental strand, 45369083 - 45368992
Alignment:
| Q |
200 |
ataattaattccttggaacctttttgtatgcatgtgttccaaacattggaataaatagttcccatcttacattcccaggaacttaatttgta |
291 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||||| | |||||||| |||||||||| ||||||||||| ||||| |||| | |||||||| |
|
|
| T |
45369083 |
ataattcattccttggaatatttttgtgtgcatgtctaccaaacatgggaataaataattcccatcttagattcctgggaattcaatttgta |
45368992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 295
Target Start/End: Complemental strand, 49525906 - 49525807
Alignment:
| Q |
196 |
gggtataattaattccttggaacctttttgtatgcatgtgttccaaacattggaataaatagttcccatcttacattcccaggaacttaatttgtagagg |
295 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| | |||| | ||||||| || |||||| |||||||||||||||| |||||||| |||||||||| |
|
|
| T |
49525906 |
gggtataattaattccttagaatgtttttgtgtatatgtatatcaaacatgtgagtaaatatttcccatcttacattcttgggaacttagtttgtagagg |
49525807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 207 - 313
Target Start/End: Original strand, 18796 - 18902
Alignment:
| Q |
207 |
attccttggaacctttttgtatgcatgtgttccaaacattggaataaatagttcccatcttacattcccaggaacttaatttgtagaggggaaacaaacg |
306 |
Q |
| |
|
||||||| ||| ||||||||||||||| | |||||||| |||||||||| |||||| |||| ||||| ||||| |||||| ||||| ||||||||| |
|
|
| T |
18796 |
attcctttgaatatttttgtatgcatgtataccaaacataggaataaataattcccaccttagattcctaggaatctaatttacagaggtgaaacaaaca |
18895 |
T |
|
| Q |
307 |
cccccta |
313 |
Q |
| |
|
||||||| |
|
|
| T |
18896 |
cccccta |
18902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 6813374 - 6813479
Alignment:
| Q |
207 |
attccttggaacctttttgtatgcatgtgttccaaacattggaataaatagttcccatcttacattcccaggaacttaatttgtagaggggaaacaaacg |
306 |
Q |
| |
|
|||||||| || ||||||||||||||| | |||||||| |||||||||| ||| ||||||| ||||| ||||| |||||| ||||| ||||||||| |
|
|
| T |
6813374 |
attccttgaaatatttttgtatgcatgtataccaaacataggaataaataattctcatcttagattcctaggaatctaatttacagaggtgaaacaaaca |
6813473 |
T |
|
| Q |
307 |
ccccct |
312 |
Q |
| |
|
|||||| |
|
|
| T |
6813474 |
ccccct |
6813479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 194 - 291
Target Start/End: Original strand, 17902241 - 17902338
Alignment:
| Q |
194 |
ccgggtataattaattccttggaacctttttgtatgcatgtgttccaaacattggaataaatagttcccatcttacattcccaggaacttaatttgta |
291 |
Q |
| |
|
||||| |||||| ||||| ||||| ||||||| ||||||| | |||||||| |||||||||| ||||||||||| ||||| |||| | |||||||| |
|
|
| T |
17902241 |
ccgggaataattcattccctggaatatttttgtgtgcatgtctaccaaacatgggaataaataattcccatcttagattcctgggaattcaatttgta |
17902338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 228 - 314
Target Start/End: Complemental strand, 7968452 - 7968369
Alignment:
| Q |
228 |
tgcatgtgttccaaacattggaataaatagttcccatcttacattcccaggaacttaatttgtagaggggaaacaaacgccccctaa |
314 |
Q |
| |
|
||||||||| ||||||| ||||||||| ||||||||||| |||| |||| |||||||||| ||| |||||||||||||||||| |
|
|
| T |
7968452 |
tgcatgtgtatcaaacatgggaataaattattcccatcttagattc---ggaatttaatttgtataggtgaaacaaacgccccctaa |
7968369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 8037962 - 8037860
Alignment:
| Q |
200 |
ataattaattccttggaacctttttgtatgcatgtgttccaaacattggaataaatagttcccatcttacattcccaggaacttaatttgtagaggggaa |
299 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||| | |||||||| |||||||| ||||||||||| ||||| |||| | ||||| | |||| ||| |
|
|
| T |
8037962 |
ataattaattccttgaaatatttttgtgtgcatgtctgccaaacatgggaataaa---ttcccatcttaaattcctgggaattaaatttttggaggtgaa |
8037866 |
T |
|
| Q |
300 |
acaaac |
305 |
Q |
| |
|
|||||| |
|
|
| T |
8037865 |
acaaac |
8037860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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