View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_30 (Length: 354)
Name: NF4012_low_30
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_30 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 354
Target Start/End: Original strand, 38141628 - 38141969
Alignment:
| Q |
15 |
ggggaattttatgaaggttgttgctaatgcacagagaaagcggtggtcaatggaagatcaagatatgactttggttggatttaaccaacatgtgtaggcn |
114 |
Q |
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| T |
38141628 |
ggggaattttatgaaggttgttgctaatgcacagagaaagcggtggtcaatggaagatcaagatatgactttggttggatttaaccaacatgtgtaggca |
38141727 |
T |
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| Q |
115 |
nnnnnnntattaaaaagtgacatagatagttgaaggtgaattgatggtacaaactttgagggata-cgatttactaatacaaatagaaatgggggtattc |
213 |
Q |
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| T |
38141728 |
aaaaatatattaaaaagtgacatagatagttgaaggttaattgatggtgcaaactttgagggatagcgatttactaatgcaaatagaaatgggagtattc |
38141827 |
T |
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| Q |
214 |
caggaaaactacgattgaactggaagacaggtggtggcatgaa-nnnnnnnnnnnnnnaagtattttattaataggttatgaccggtaaaaaagtaaagg |
312 |
Q |
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| T |
38141828 |
caggaaaactgcgattgaactggaagacaggtggtggcatgaattttttattttttttaagtattttattaacaggttatgaccggt-aaaaagtaaggg |
38141926 |
T |
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| Q |
313 |
tccatggatgaaccacttttaggaaggt-catattaggggcac |
354 |
Q |
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| T |
38141927 |
tccatggatgaaccacttttaggaaggtccatattaggggcac |
38141969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 354
Target Start/End: Complemental strand, 17486430 - 17486091
Alignment:
| Q |
15 |
ggggaattttatgaaggttgttgctaatgcacagagaaagcggtggtcaatggaagatcaagatatgactttggttggatttaaccaacatgtgtaggcn |
114 |
Q |
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| T |
17486430 |
ggggaattttatgaaggttgttgctaatgcacagagaaagcggtggtcaatggaagatcaagatatgactttggttggatttaaccaacatgtgtaggca |
17486331 |
T |
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| Q |
115 |
nnnnnnntattaaaaagtgacatagatagttgaaggtgaattgatggtacaaactttgagggata-cgatttactaatacaaatagaaatgggggtattc |
213 |
Q |
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| T |
17486330 |
aaaaatatattaaaaagtgacatagatagttgaaggtgaattgatggtgcaaactttgagggatagcgatttactaatgcaaatagaaatgggagtattc |
17486231 |
T |
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| Q |
214 |
caggaaaactacgattgaactggaagacaggtggtggcatgaannnnnnnnnnnnnnaagtattttattaataggttatgaccggtaaaaaagtaaaggt |
313 |
Q |
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| T |
17486230 |
caggaaaactgcgattgaactgaaagacaggtggtggcatgaa-ttttttattttttaagtattttattaacaggttatgaccggt-aaaaagtaaggat |
17486133 |
T |
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| Q |
314 |
ccatggatgaaccacttttaggaaggt-catattaggggcac |
354 |
Q |
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| T |
17486132 |
ccatggatgaaccacttttaggaaggtccatattaggggcac |
17486091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 354
Target Start/End: Original strand, 17566784 - 17567123
Alignment:
| Q |
15 |
ggggaattttatgaaggttgttgctaatgcacagagaaagcggtggtcaatggaagatcaagatatgactttggttggatttaaccaacatgtgtaggcn |
114 |
Q |
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| T |
17566784 |
ggggaattttatgaaggttgttgctaatgcacagagaaagcggtggtcaatggaagatcaagatatgactttggttggatttaaccaacatgtgtaggca |
17566883 |
T |
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| Q |
115 |
nnnnnnntattaaaaagtgacatagatagttgaaggtgaattgatggtacaaactttgagggata-cgatttactaatacaaatagaaatgggggtattc |
213 |
Q |
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| T |
17566884 |
aaaaatatattaaaaagtgacatagatagttgaaggtgaattgatggtgcaaactttgagggatagcgatttactaatgcaaatagaaatgggagtattc |
17566983 |
T |
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| Q |
214 |
caggaaaactacgattgaactggaagacaggtggtggcatgaannnnnnnnnnnnnnaagtattttattaataggttatgaccggtaaaaaagtaaaggt |
313 |
Q |
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| T |
17566984 |
caggaaaactgcgattgaactgaaagacaggtggtggcatgaa-ttttttattttttaagtattttattaacaggttatgaccggt-aaaaagtaaggat |
17567081 |
T |
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| Q |
314 |
ccatggatgaaccacttttaggaaggt-catattaggggcac |
354 |
Q |
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| T |
17567082 |
ccatggatgaaccacttttaggaaggtccatattaggggcac |
17567123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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