View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_31 (Length: 339)
Name: NF4012_low_31
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_31 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 32785990 - 32785664
Alignment:
| Q |
13 |
agcagagagaattaagagtagtagaaacctcatagattcagtgatctgaaatacgatgtaaactaagcaactcgagtaactagttacgggttgtaactaa |
112 |
Q |
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| T |
32785990 |
agcagagagaattaagagtagtagaaacctcatagattcagtgatttgaaatgtgatgtaaactaagcagctcgagtaactagttacgggttgtaactaa |
32785891 |
T |
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| Q |
113 |
cttctaaccaactaaactcagttcaaacaacattttatcaagttgttaagcttgctaagtgacttcctcnnnnnnnnnnnnnnnnnnnngctttttaagt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32785890 |
cttctaaccaactaaactcagttcaaacaacattttatcaagttgttaagcttgctaagtgacttcctcaaaaataaaaataaaataaagctttttaagt |
32785791 |
T |
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| Q |
213 |
gacatgttgcagctggtggagattgcggtgagtgaggccgcttaggatggtctggtggtgttggcttgagattttttgagtgttcctccttaaagttcaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32785790 |
gacatgttgcagctggtggagattgcggtgagtgaggccgcttaggttggtctggtggtgttggcttgagattttttgagtgttcctccttaaagttcaa |
32785691 |
T |
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| Q |
313 |
aatcgattctaccttgtgttaatttat |
339 |
Q |
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| T |
32785690 |
actcgattctcccttgtgttaatttat |
32785664 |
T |
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