View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_33 (Length: 333)
Name: NF4012_low_33
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_33 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 44461171 - 44461487
Alignment:
| Q |
16 |
tgaataacaaacaaattcctattatagcaaaaaacaaatcactggacaccaaatgtacctctctccccccattataaaaccatgaaaccttcctctacca |
115 |
Q |
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| T |
44461171 |
tgaataacaaacaaattcctattatagcaaaaaacaaatcactggacaccaaatgtacctctctccccccattataaaaccatgaaaccttcctctacca |
44461270 |
T |
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| Q |
116 |
tatcctcgtggttgcacacaacaatcaataaaaacccaactccgagaagaacaagaaaaataagtgacaacnnnnnnnnnnntacatcatgacaaaactc |
215 |
Q |
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| T |
44461271 |
tatcctcgtggttgcacacaacaatcaataaaaacccaactccgagaagaacaagaaaaataagtgacaacaaaaaaaaaac-acatcatgacaaaactc |
44461369 |
T |
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| Q |
216 |
ttctcggttttggttatctgtgtgattgtattggcacaccaaacagtcgcacaagaaaccaaaggtaaagatttaatcacaagggtatgccagctagcac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44461370 |
ttctcggttttggttatctgtgtgattgtattggcacaccaaacagtcgcacaagaaaccaaaggtaaagatttaatcacaagggtatgccagctagcac |
44461469 |
T |
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| Q |
316 |
agaaaaacagtgacctct |
333 |
Q |
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|||||||||||||||||| |
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| T |
44461470 |
agaaaaacagtgacctct |
44461487 |
T |
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