View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_34 (Length: 318)
Name: NF4012_low_34
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 32097559 - 32097263
Alignment:
| Q |
1 |
tcaaaccatttgctaatgttaaaataaatcttagacatactaacacaagttagcatgactctaatgttaatttcatccaacttcacttctaacaagcaac |
100 |
Q |
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| T |
32097559 |
tcaaaccatttgctaatgttaaaataaattttagacatact----gaagttagcatgactcttatgttaatttcatccaacttcacttctaacaagcaac |
32097464 |
T |
|
| Q |
101 |
aatttggaggatgtctttttatttctttgtagaaaaccaacatataaatgttgaatgagtgagatctagagaaaccaaattcctaaataagtgacatgca |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||| |
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| T |
32097463 |
aatttggagcatgtctttttatttctttgtagaaaaccaacatataaatgttgaatgagtgagatctagggaaacctaattcctaaaaaagtgacatgca |
32097364 |
T |
|
| Q |
201 |
tgtctgcattggcgacaaaactattagaacttagtgacatattgtaattttagcnnnnnnnnnctacactctttagtttcacaaaattatgttcacatca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32097363 |
tgtctgcattggcgacaaaactattagaacttagtgagatattgtaattttagc-aaaaaaaactacactctttagtttcacaaaattatgttcacatca |
32097265 |
T |
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