View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_36 (Length: 313)
Name: NF4012_low_36
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 42021702 - 42021401
Alignment:
| Q |
1 |
caaccataatctactattcaaaccactccatgtcctaaacataaaaacagcagaaacagaatcaatattactaggattgaaaatccaatcatgcaaatcc |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42021702 |
caaccataatctactattcaaaccactccttgtcctaaacataaaaacagcagaaacagaatcaatattactaggattgaaaatccaatcatgcaaatcc |
42021603 |
T |
|
| Q |
101 |
cacatcatatccactaccaaaccatccacaaaaattgtttgattgccacgaaaattccacttcaatctcttcaccttaaacacaatcttcttatccataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42021602 |
cacatcatatccactaccaaaccatccacaaaaattgtttgattgccacgaaaattccacttcaatctcttcaccttaaacacaatcttcttatccataa |
42021503 |
T |
|
| Q |
201 |
acaaacataacatgtgactctttgatgttgatccttcttcttctactccacactttatcaatatatcgtgtgaaattcctgtttcagaaaactttgcctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42021502 |
acaaacataacatgtgactctttgatgttgatccttcttcttctactccacactttatcaatatatcgtgtgaaattcctgtttcagaaaactttgcctt |
42021403 |
T |
|
| Q |
301 |
tg |
302 |
Q |
| |
|
|| |
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|
| T |
42021402 |
tg |
42021401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 36056149 - 36056063
Alignment:
| Q |
109 |
atccactaccaaaccatccacaaaaattgtttgattgccacgaaaattccacttcaatctcttcaccttaaacacaatcttcttatc |
195 |
Q |
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| T |
36056149 |
atccaccaacaacccatcaacaaaaattgtttgattacccctaaaattccacttcaacctcttcacacaaattacaatcttcttatc |
36056063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 20085338 - 20085525
Alignment:
| Q |
2 |
aaccataatctactattcaaaccactccatgtcctaaacataaaaacagcagaaacagaatcaatattactaggattgaaaatccaatcatgcaaatccc |
101 |
Q |
| |
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||||| |||||||||| ||||||||| | ||| |||||||| ||||||||| || ||||| | || |||||| || | ||||||||| | ||||| |
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| T |
20085338 |
aaccacaatctactatccaaaccacttcttgttctaaacatgaaaacagcataaccagaagc----ttg--aggattaaagaaccaatcatgaacatccc |
20085431 |
T |
|
| Q |
102 |
acatcatatccactaccaaaccatccacaaaaattgtttgattgccacgaaaattccacttcaatctcttcaccttaaacacaatcttcttatc |
195 |
Q |
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| | || ||| || | |||||||| |||||||| |||||||| || | ||||||||| | |||||||||||| || |||| |||||||||| |
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| T |
20085432 |
aaagcaaatcaaccaataaaccatcaacaaaaatggtttgattccctctaaaattccattgcaatctcttcacacgaatcacattcttcttatc |
20085525 |
T |
|
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