View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4012_low_38 (Length: 296)

Name: NF4012_low_38
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4012_low_38
NF4012_low_38
[»] chr4 (7 HSPs)
chr4 (23-277)||(45772834-45773088)
chr4 (21-254)||(45772161-45772394)
chr4 (12-122)||(45778208-45778318)
chr4 (125-253)||(38709458-38709592)
chr4 (23-254)||(45778545-45778773)
chr4 (126-193)||(55874624-55874691)
chr4 (30-154)||(52870072-52870195)
[»] chr8 (3 HSPs)
chr8 (147-277)||(41828154-41828282)
chr8 (23-254)||(41828712-41828942)
chr8 (95-253)||(34666842-34667006)
[»] chr1 (4 HSPs)
chr1 (61-205)||(29148978-29149119)
chr1 (61-129)||(40648953-40649021)
chr1 (58-128)||(36385703-36385776)
chr1 (67-129)||(12926562-12926624)
[»] chr7 (5 HSPs)
chr7 (30-154)||(85005-85128)
chr7 (63-129)||(32859919-32859985)
chr7 (76-157)||(39146842-39146921)
chr7 (75-158)||(23632973-23633054)
chr7 (207-244)||(23633060-23633097)
[»] chr3 (3 HSPs)
chr3 (30-154)||(41040578-41040702)
chr3 (61-128)||(8435976-8436043)
chr3 (61-128)||(8439521-8439588)
[»] chr5 (4 HSPs)
chr5 (30-154)||(39149390-39149510)
chr5 (22-157)||(6903185-6903316)
chr5 (53-175)||(4790117-4790236)
chr5 (207-244)||(6903141-6903178)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 45773088 - 45772834
Alignment:
Q  23 ggtggagtttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgc 122  Q
    ||||||||||||||||| |||  ||||||||||  || ||||  ||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||    
T  45773088 ggtggagtttcacatggaaaatgtgattcattttccaccatgaaaaagtttattttttaccatttaattaaagaagagcatggattttaccatagtctgc 45772989  T
Q  123 ctacactttatatttttccctcatcatcttcaacctcatgaaaatgcaaatctccaattcaccaccaccaagagactacaatctatcttcatcaagttgt 222  Q
    ||||||| |||||||| ||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  45772988 ctacactatatattttcccctcatcatcttcagcctcatgaaaatgcaaatctgcaatttaccaccaccaagagactacaatccatcttcatcaagttgt 45772889  T
Q  223 tcttaaaaaacacagaaaattaaaatcaaagtttaatccaccataacagcattat 277  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45772888 tcttaaaaaacacagaaaattaaaatcaaagttcaatccaccataacagcattat 45772834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 45772161 - 45772394
Alignment:
Q  21 taggtggagtttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaag-agcatgaattttatcatagtc 119  Q
    ||||||||||||||||||| |||| | | || |||| || |||  ||||||||  ||| ||||||| |||||||| || |||||  ||||||  || |||    
T  45772161 taggtggagtttcacatggaaaaggttaatcctttcccaccataagaaagttt--tttgtaccattagattaaaagaggagcatagattttacgatggtc 45772258  T
Q  120 tgcctacactttatatttttccctcatcatcttcaacctcatgaaaatgcaaatctccaattcaccaccaccaagagactacaatctatcttcatcaagt 219  Q
    |||| ||||| |||||||| |||||||||||||||||||||||| ||||||||| |    ||||| || | ||||||||||||||| |||||||||||||    
T  45772259 tgcccacactatatattttcccctcatcatcttcaacctcatgagaatgcaaatatgttgttcactactagcaagagactacaatccatcttcatcaagt 45772358  T
Q  220 tgttctt-aaaaaacacagaaaattaaaatcaaagt 254  Q
    ||||||| ||||||| || |||||||||||||||||    
T  45772359 tgttcttaaaaaaacccataaaattaaaatcaaagt 45772394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 45778208 - 45778318
Alignment:
Q  12 ggatcgttttaggtggagtttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaatttta 111  Q
    ||||||||||||||||||||||||||| ||||| |||||| |||||||  ||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  45778208 ggatcgttttaggtggagtttcacatgagaaaggtgattcctttctcactatgggaaagtttattttttaccatttgattaaagaagagcatggatttta 45778307  T
Q  112 tcatagtctgc 122  Q
     ||||||||||    
T  45778308 ccatagtctgc 45778318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 125 - 253
Target Start/End: Complemental strand, 38709592 - 38709458
Alignment:
Q  125 acactttatatttttccctcatcatcttcaacctcatgaaaatgcaaatctccaattcaccaccaccaagagactacaatct------atcttcatcaag 218  Q
    ||||| |||| ||| || |||||||||||||| | || ||||||||||||| ||||||||||||||||||||||| ||||||      |||||||||||     
T  38709592 acactatatactttcccatcatcatcttcaacttgataaaaatgcaaatctgcaattcaccaccaccaagagactgcaatctatacacatcttcatcaat 38709493  T
Q  219 ttgttcttaaaaaacacagaaaattaaaatcaaag 253  Q
    |||||||||||||||  ||||||||||||||||||    
T  38709492 ttgttcttaaaaaacctagaaaattaaaatcaaag 38709458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 254
Target Start/End: Complemental strand, 45778773 - 45778545
Alignment:
Q  23 ggtggagtttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaag-agcatgaattttatcatagtctg 121  Q
    |||||||||||||||||||||| | | || |||| || ||| | |||||||  ||||||||||| |||||||| || |||||  ||||||  || |||||    
T  45778773 ggtggagtttcacatgggaaaggttaatcctttcccaccatag-aaagttt--tttttaccattagattaaaagaggagcatagattttacgatggtctg 45778677  T
Q  122 cctacactttatatttttccctcatcatcttcaacctcatgaaaatgcaaatctccaattcaccaccaccaagagactacaatctatcttcatcaagttg 221  Q
    || ||||| ||||| || |||||||||||||||||||| | | ||||||||| | |  ||||| |  ||||||||||||||| | |||||||||||||||    
T  45778676 cccacactatatatcttcccctcatcatcttcaacctcgtaagaatgcaaatttgctgttcacta--accaagagactacaacccatcttcatcaagttg 45778579  T
Q  222 ttcttaa-aaaacacagaaaattaaaatcaaagt 254  Q
    ||||||| ||||| || ||| |||||||||||||    
T  45778578 ttcttaaaaaaacccataaagttaaaatcaaagt 45778545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 55874691 - 55874624
Alignment:
Q  126 cactttatatttttccctcatcatcttcaacctcatgaaaatgcaaatctccaattcaccaccaccaa 193  Q
    |||| |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  55874691 cactatatattttcccctcatcatcttcaaccccatgaaaatgcaaatctgcaattcaccaccaccaa 55874624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 52870195 - 52870072
Alignment:
Q  30 tttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacact 129  Q
    ||||||||||||||| ||| || |||  |||||||||||||||| |||||||||||| ||||| | | || |||  ||||||| || |||   |||||||    
T  52870195 tttcacatgggaaaggtgaatccttttccatcatgggaaagttt-ttttttaccattagattagagatgaacatagattttatgatggtcaatctacact 52870097  T
Q  130 ttatatttttccctcatcatcttca 154  Q
     ||||||||||||||||||||||||    
T  52870096 atatatttttccctcatcatcttca 52870072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 147 - 277
Target Start/End: Original strand, 41828154 - 41828282
Alignment:
Q  147 catcttcaacctcatgaaaatgcaaatctccaattcaccaccaccaagagactacaatctatcttcatcaagttgttcttaaaaaacacagaaaattaaa 246  Q
    ||||||||||||| ||||||||||||||| ||||| ||| ||||||||| ||||||||| |||||||||||||||||||||||||||||  |||||||||    
T  41828154 catcttcaacctcgtgaaaatgcaaatctgcaatttaccgccaccaagatactacaatccatcttcatcaagttgttcttaaaaaacac--aaaattaaa 41828251  T
Q  247 atcaaagtttaatccaccataacagcattat 277  Q
    ||||||||| |||||||||||||| ||||||    
T  41828252 atcaaagttcaatccaccataacaacattat 41828282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 254
Target Start/End: Complemental strand, 41828942 - 41828712
Alignment:
Q  23 ggtggagtttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaag-agcatgaattttatcatagtctg 121  Q
    |||||||||||||||| ||||| | | || |||  ||||||| ||||||||  ||| ||||||| |||||||| || | |||  ||||||  || |||||    
T  41828942 ggtggagtttcacatgagaaaggttaatctttttccatcatgagaaagttt--tttgtaccattagattaaaataggatcatagattttacgattgtctg 41828845  T
Q  122 cctacactttatatttttccctcatcatcttcaacctcatgaaaatgcaaatctccaattcaccaccaccaagagactacaatctatcttcatcaagttg 221  Q
    || ||||| |||||||| |||||||||||||||||||| ||| ||||||||| |    || || || | ||||||||||||||| |||||||||||||||    
T  41828844 cccacactatatattttcccctcatcatcttcaacctcgtgagaatgcaaatatgttgtt-actactagcaagagactacaatccatcttcatcaagttg 41828746  T
Q  222 ttcttaa-aaaacacagaaaattaaaatcaaagt 254  Q
    ||||||| ||||| || |||||||||||||||||    
T  41828745 ttcttaaaaaaacccataaaattaaaatcaaagt 41828712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 95 - 253
Target Start/End: Original strand, 34666842 - 34667006
Alignment:
Q  95 aaagagcatgaattttatcatagtctgcctacactttatatttttccctcatcatcttcaacctcatgaaaatgcaaatctccaattcaccaccaccaag 194  Q
    |||||||||  ||||||| || || |||||||| | |||||||| | |||||||||||||||||  ||| ||||||| ||| |||||||||||||| |||    
T  34666842 aaagagcatagattttatgatggtatgcctacattatatattttccactcatcatcttcaaccttgtgagaatgcaactctgcaattcaccaccactaag 34666941  T
Q  195 agactaca------atctatcttcatcaagttgttcttaaaaaacacagaaaattaaaatcaaag 253  Q
    ||||||||      ||| |||||||||||||| |||||||||||| || ||||||||||||||||    
T  34666942 agactacaatccatatccatcttcatcaagttattcttaaaaaacccataaaattaaaatcaaag 34667006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 61 - 205
Target Start/End: Original strand, 29148978 - 29149119
Alignment:
Q  61 catgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacactttatatttttccctcatcatcttcaacctca 160  Q
    ||||||||||||| |||  ||||||| ||||||| |  | ||| ||||||||||| ||| |||||| ||  ||||||||||||||||||||||||||||     
T  29148978 catgggaaagttt-tttcctaccattagattaaagagcaacataaattttatcatggtcagcctacgct--atatttttccctcatcatcttcaacctcg 29149074  T
Q  161 tgaaaatgcaaatctccaattcaccaccaccaagagactacaatc 205  Q
    ||||||||||||| | ||||||| || ||||||||||||||||||    
T  29149075 tgaaaatgcaaatatgcaattcagcatcaccaagagactacaatc 29149119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 40648953 - 40649021
Alignment:
Q  61 catgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacact 129  Q
    ||||||||||||||||||  | |||| ||||||||| ||||||  || || ||||||||||||||||||    
T  40648953 catgggaaagtttattttggatcattagattaaaaaggagcatagatgttttcatagtctgcctacact 40649021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 36385703 - 36385776
Alignment:
Q  58 catcatgggaaagtttatttt---ttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacac 128  Q
    |||||||||||||||| ||||   |||||||| ||||||| | ||| || ||||||||||||| ||||||||||    
T  36385703 catcatgggaaagtttttttttttttaccattagattaaagaggagtattaattttatcataggctgcctacac 36385776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 12926624 - 12926562
Alignment:
Q  67 aaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacact 129  Q
    ||||||||||||  | |||| ||||||||| ||||||  || |||||||||||||||||||||    
T  12926624 aaagtttattttggatcattagattaaaaaggagcatagatgttatcatagtctgcctacact 12926562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 85128 - 85005
Alignment:
Q  30 tttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacact 129  Q
    ||||||||||||||| ||| || |||| || ||||| ||||||| |||||||||||| ||||| | | || |||  ||||||| || |||  ||||||||    
T  85128 tttcacatgggaaaggtgaatcctttcccaccatggaaaagttt-ttttttaccattagattagagatgaacatagattttatgatggtcaacctacact 85030  T
Q  130 ttatatttttccctcatcatcttca 154  Q
     ||||||||||||||||||||||||    
T  85029 atatatttttccctcatcatcttca 85005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 32859985 - 32859919
Alignment:
Q  63 tgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacact 129  Q
    ||||||||||||||||  | |||| ||||||||||||||||  || |||||||||||||||||||||    
T  32859985 tgggaaagtttattttggatcattagattaaaaaagagcatagatattatcatagtctgcctacact 32859919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 39146842 - 39146921
Alignment:
Q  76 tttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacactttatatttttccctcatcatcttcaacc 157  Q
    ||||||||||| ||||||| | ||| ||  ||||||| |||||||||| ||||||  |||||| ||||||||||||||||||    
T  39146842 tttttaccattagattaaagaggagtatagattttatgatagtctgcccacactt--tattttcccctcatcatcttcaacc 39146921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 23632973 - 23633054
Alignment:
Q  75 ttttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacactttatatttttccctcatcatcttcaacct 158  Q
    |||||||||||| ||||||| | ||| ||  ||||||| || ||||||| ||||||  |||||| |||||||||||||||||||    
T  23632973 ttttttaccattagattaaagaggagtatagattttatgatggtctgcccacactt--tattttcccctcatcatcttcaacct 23633054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 23633060 - 23633097
Alignment:
Q  207 atcttcatcaagttgttcttaaaaaacacagaaaatta 244  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  23633060 atcttcatcaagttgttcttagaaaacccagaaaatta 23633097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 41040578 - 41040702
Alignment:
Q  30 tttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacact 129  Q
    ||||||||||||||| ||| || ||||||| ||||  ||||||| |||||||||||| ||||| | | || |||  ||||||| || |||  ||||||||    
T  41040578 tttcacatgggaaaggtgaatcctttctcaccatgaaaaagttttttttttaccattagattagagatgaacatagattttatgatggtcaacctacact 41040677  T
Q  130 ttatatttttccctcatcatcttca 154  Q
     |||||||||||||||| |||||||    
T  41040678 atatatttttccctcattatcttca 41040702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 8435976 - 8436043
Alignment:
Q  61 catgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacac 128  Q
    ||||||||||||||||||  | |||| ||||||||| ||||||  || ||||||||||||||||||||    
T  8435976 catgggaaagtttattttggatcattagattaaaaaggagcatagatgttatcatagtctgcctacac 8436043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 8439521 - 8439588
Alignment:
Q  61 catgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacac 128  Q
    ||||||||||||||||||  | |||| ||||||||| ||||||  || ||||||||||||||||||||    
T  8439521 catgggaaagtttattttggatcattagattaaaaaggagcatagatgttatcatagtctgcctacac 8439588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 39149510 - 39149390
Alignment:
Q  30 tttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacact 129  Q
    ||||||||||||||| ||| || |||| || ||||||||||||| |||||||||||| ||||| | | || |||  ||||||| || ||   ||||||||    
T  39149510 tttcacatgggaaaggtgaatcctttcccaccatgggaaagttt-ttttttaccattagattagagatgaacatagattttatgatggt---cctacact 39149415  T
Q  130 ttatatttttccctcatcatcttca 154  Q
     ||||||||||||||||||||||||    
T  39149414 atatatttttccctcatcatcttca 39149390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 6903316 - 6903185
Alignment:
Q  22 aggtggagtttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctg 121  Q
    ||||||||||| ||||||||||||  | || ||| ||  ||||||||||||| ||||||| |||| ||||||| | ||| ||  ||||||| || |||||    
T  6903316 aggtggagtttaacatgggaaagactaatccttt-tccccatgggaaagttt-ttttttatcattagattaaagaggagtatagattttatgatggtctg 6903219  T
Q  122 cctacactttatatttttccctcatcatcttcaacc 157  Q
    || |||||||||  ||| ||||||||||||||||||    
T  6903218 cccacactttat--tttcccctcatcatcttcaacc 6903185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 4790236 - 4790117
Alignment:
Q  53 tttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacactttatatttttccctcatcatctt 152  Q
    |||| ||||||||||||||| |||||| ||||||  |||||| | | | ||  ||||||| |||||||  | ||||| |||||||| ||| |||||||||    
T  4790236 tttcccatcatgggaaagtt-atttttgaccattaaattaaagaggtgtatagattttatgatagtctatcaacactatatattttccccacatcatctt 4790138  T
Q  153 caacctcatgaaaatgcaaatct 175  Q
    ||||||  ||| |||||||||||    
T  4790137 caacct--tgagaatgcaaatct 4790117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 6903178 - 6903141
Alignment:
Q  207 atcttcatcaagttgttcttaaaaaacacagaaaatta 244  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  6903178 atcttcatcaagttgttcttagaaaacccagaaaatta 6903141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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