View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_39 (Length: 294)
Name: NF4012_low_39
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 14104330 - 14104178
Alignment:
| Q |
1 |
aaactcccaaagatcaaagaaagcctccatagaaaaaccagtccaagttaagggacaaccacccaaaacagcatacccnnnnnnnccaaacaccaaaaca |
100 |
Q |
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| T |
14104330 |
aaactcccaaagatcaaagaaagcctccatagaaaaaccagtccaagttaagggacaaccacacaaaacagcatacccaaaaaaaccaaacaccaaaaca |
14104231 |
T |
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| Q |
101 |
atccaagccacattcccagaagcaacaagagcaataacaccaagcttaaactt |
153 |
Q |
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| T |
14104230 |
atccaagccacattcccagaagcaacaagagcaataacaccaagcttaaactt |
14104178 |
T |
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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 14104115 - 14104055
Alignment:
| Q |
216 |
tgatgttattcttgagctgactttgcaagaagaaataaagaggaaaaaagaatgcataagt |
276 |
Q |
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| T |
14104115 |
tgatgttattcttgagctgactttgcaagaagaaataaagaggaaaaaagaatgcataagt |
14104055 |
T |
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