View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_4 (Length: 608)
Name: NF4012_low_4
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 53575292 - 53575473
Alignment:
| Q |
9 |
agatgaaggagaggaagataaaactaaaggagacatttttatgaatttgtgtttattgatggtgatgttgaatgagaaagattaaaatcatggcgataga |
108 |
Q |
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| T |
53575292 |
agatgaaggagaggaagataaaactaaaggagacatttttatgaatttgtgtttattgatggtgatgttgaatgagaaagattaaaatcatggtggtaga |
53575391 |
T |
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| Q |
109 |
gataatgaataaggttgtgaacttagctcagttggttgctacaatgcatgcataaaatatgcaaggttcggtggttcaaatc |
190 |
Q |
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| T |
53575392 |
gataatgaataaggttgtgaacttaattcagttggttggtataatgcatgcataaaatatgcaaggttcgggggttcaaatc |
53575473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 310 - 560
Target Start/End: Original strand, 53575591 - 53575832
Alignment:
| Q |
310 |
ataatgaaaaagacacttggaattaaaataaagctaaaagaattaataatatccactag----acatgccacattatnnnnnnnnntgtcacttgttata |
405 |
Q |
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| T |
53575591 |
ataatgaaaaagacacttgggattaaaataaagctaaaataattaataatatgcactagctagacatgccacataa-----aaaaatgtcacttg----- |
53575680 |
T |
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| Q |
406 |
taaacttaagtgcacatttagatgcttcgaatccgagattcaaaactaacaaatcttcaaataacaaaacgagaatctcaatttttaacgggagttaaat |
505 |
Q |
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| T |
53575681 |
---acttaagtgcacatttagatgctccgagtccgatattcaaaatcaacaaatcttaaaataaaaaaacgagaatctcaatttttaacgggagttaaac |
53575777 |
T |
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| Q |
506 |
caaaactagctcaaatgatagagtaaacatcatttaaccttattagaaatgatca |
560 |
Q |
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| T |
53575778 |
caaaactagctcaaatgatagagtaaacatcatttaaccttattagaaatgatca |
53575832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 53574505 - 53574459
Alignment:
| Q |
43 |
atttttatgaatttgtgtttattgatggtgatgttgaatgagaaaga |
89 |
Q |
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| T |
53574505 |
atttttctgcatttgtgtttattgatgatgatgttgaatgagaaaga |
53574459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 53574330 - 53574277
Alignment:
| Q |
310 |
ataatgaaaaagacacttggaattaaaataaagctaaaagaattaataatatcc |
363 |
Q |
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| T |
53574330 |
ataatgaaaaagccaagtggaattaaaataaagctaaaataatcaataatatcc |
53574277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 28679293 - 28679257
Alignment:
| Q |
327 |
tggaattaaaataaagctaaaagaattaataatatcc |
363 |
Q |
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| T |
28679293 |
tggaattaaaataaatctaaaagaattaataatatcc |
28679257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 25758172 - 25758212
Alignment:
| Q |
327 |
tggaattaaaataaagctaaaagaattaataatatccacta |
367 |
Q |
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| T |
25758172 |
tggaattaaaataaagttaaaagaattaataatatccacta |
25758212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 22053588 - 22053638
Alignment:
| Q |
311 |
taatgaaaaagacacttggaattaaaataaagctaaaagaattaataatat |
361 |
Q |
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||||||||||| || |||||||||||||||| ||||| |||||||||||| |
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| T |
22053588 |
taatgaaaaaggcaagtggaattaaaataaagataaaaaaattaataatat |
22053638 |
T |
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