View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_41 (Length: 284)
Name: NF4012_low_41
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 10284076 - 10283818
Alignment:
| Q |
19 |
aaaccaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagtatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10284076 |
aaaccaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaactggtatggattgataccagagctttttccaaatgctaagtatg |
10283977 |
T |
|
| Q |
119 |
ttctagggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcagtagaagttcctttgttaacttctgattatggtgcttctga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10283976 |
ttctagggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcaggagaagttcctttgttaacttctgattatggtgcttctga |
10283877 |
T |
|
| Q |
219 |
aggttggattagtttaaatttgaatcctaaagtggctcctgagtttgctgcctatgcta |
277 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
10283876 |
aggttggattggttcaaatttgaatcctaaagtggctcctgagtttgctacttatgcta |
10283818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 10243252 - 10243004
Alignment:
| Q |
19 |
aaaccaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagtatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |||| |||||||| |
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| T |
10243252 |
aaaccaaatcctgaactagctaacttgatccacaagaaatgcataggattgagcaattggtatggactgataccagagctttttcctaatgttaagtatg |
10243153 |
T |
|
| Q |
119 |
ttctagggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcagtagaagttcctttgttaacttctgattatggtgcttctga |
218 |
Q |
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||| |||||||||||| |||||||||||||||||| |||||||| ||||||| ||||||| ||| ||||||||||| |||||||| ||||| ||||||| |
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| T |
10243152 |
ttcaagggatcatgactggtgcaatggaaccttatgtgaaaaagttgagacactatgcaggagaggttcctttgttgacttctgagtatggctcttctga |
10243053 |
T |
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| Q |
219 |
aggttggattagtttaaatttgaatcctaaagtggctcctgagtttgct |
267 |
Q |
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|||||||||| || |||| ||||||||||||||||||||||||||||| |
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| T |
10243052 |
aggttggattgcttcaaatgtgaatcctaaagtggctcctgagtttgct |
10243004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 10265137 - 10264889
Alignment:
| Q |
19 |
aaaccaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagtatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |||||||| |||| |||||||| |
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| T |
10265137 |
aaaccaaatcctgaactagctaacttgatccacaagaaatgcataggattgagcgattggtatggattgataccagaactttttcctaatgttaagtatg |
10265038 |
T |
|
| Q |
119 |
ttctagggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcagtagaagttcctttgttaacttctgattatggtgcttctga |
218 |
Q |
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||||||| |||||||||||| ||||||||| ||| |||||||| ||||||| ||||||| ||| ||||||||||| |||||||| |||||||||||||| |
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| T |
10265037 |
ttctaggaatcatgacaggttcaatggaacattacttgaaaaagttgagacactatgcaggagaggttcctttgttgacttctgaatatggtgcttctga |
10264938 |
T |
|
| Q |
219 |
aggttggattagtttaaatttgaatcctaaagtggctcctgagtttgct |
267 |
Q |
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|||||||||| || |||| ||||||||||||||||||||||||||||| |
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| T |
10264937 |
aggttggattgcttcaaatgtgaatcctaaagtggctcctgagtttgct |
10264889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 21 - 267
Target Start/End: Complemental strand, 10272832 - 10272586
Alignment:
| Q |
21 |
accaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagtatgtt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| || |||||||||||| || |
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| T |
10272832 |
accaaatcctgaactagctaacttgatccacaagaaatgcataggattgagcaattggtatggattgataccggagcttttccctaatgctaagtatctt |
10272733 |
T |
|
| Q |
121 |
ctagggatcatgacaggtgcaatggaaccttatatgaaaaagctgagacattatgcagtagaagttcctttgttaacttctgattatggtgcttctgaag |
220 |
Q |
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|||||||||||||||||| ||||||||| ||| |||||||| ||||||| ||||||| ||| ||||||||| | |||||||| ||||| ||||||||| |
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| T |
10272732 |
ctagggatcatgacaggttcaatggaacattacttgaaaaagttgagacactatgcaggagaggttcctttggtgacttctgagtatggctcttctgaag |
10272633 |
T |
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| Q |
221 |
gttggattagtttaaatttgaatcctaaagtggctcctgagtttgct |
267 |
Q |
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|||||||| || |||| ||||||||||||||||||||||||||||| |
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| T |
10272632 |
gttggattgcttcaaatgtgaatcctaaagtggctcctgagtttgct |
10272586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 48367676 - 48367773
Alignment:
| Q |
19 |
aaaccaaatcctgaactagctaacttgatccacaagaaatgctcaggattaagcaattggtatggattgataccagagctttttccaaatgctaagta |
116 |
Q |
| |
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||||||||||| ||| |||| ||| | |||||||| | ||| |||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||| |
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| T |
48367676 |
aaaccaaatccagaattagcgaacataatccacaaaagatgtataggattaagcaactggtatggtttgataccggagctttttccgaatgcaaagta |
48367773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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