View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_43 (Length: 266)
Name: NF4012_low_43
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 47101729 - 47101481
Alignment:
| Q |
1 |
atgatgtgcacatatataatatagtccttcaatggaccctctacggtgtgctttcatggtgtggcggcatgatagctatttgtatatgtcattataataa |
100 |
Q |
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| T |
47101729 |
atgatgtgcacatatataatatagtccttcaatggaccctctatggtgtgctttcatggtgtggcggcatgatagctatttgtatatgtcattatattaa |
47101630 |
T |
|
| Q |
101 |
gagagatccattaatcgaacggcttgttgcaaggtaaaacctaaccctagaggatccaagtgagaaaagaatggaaattgatccctagcacttagggata |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47101629 |
gagagatccattaatctaacggcttgttgcaaggtaaaacctaaccctagaggatccaagt--gaaaagaatggaaattgatccctagcacttagggata |
47101532 |
T |
|
| Q |
201 |
gaattatagacaaatatatagtttttcttggtaattttgttggtcattttt |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47101531 |
gaattatagacaaatatatagtttttcttggtaattttgttggtctttttt |
47101481 |
T |
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