View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_44 (Length: 257)
Name: NF4012_low_44
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 52968445 - 52968221
Alignment:
| Q |
13 |
atactcaaataatagtacattgcatcagtctaagctacattataatggacagtaattaaaaagaacttccatgaaaggctaaccagaaccaggatctaaa |
112 |
Q |
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| T |
52968445 |
atactcaaataatagtacattgcatcagtctaagctacattataatggacagtaattaaatagaacttccatgaaaggctaaccagaaccaggatctaaa |
52968346 |
T |
|
| Q |
113 |
cttgatcacaatat----atatttcatttgtttaatagaattaattttaacaaccaacattttctataatttttagtttaacacttgtatataaccatca |
208 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52968345 |
cttgatcacaatatatatatatttcatttgtttaatagaattaattttaacaaccaacattttctataatttttagtttaacacttgtatataaccatc- |
52968247 |
T |
|
| Q |
209 |
atataatttcacaagtttgaatgatctgca |
238 |
Q |
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|||||||||||||||||||||||||| |
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| T |
52968246 |
----aatttcacaagtttgaatgatctgca |
52968221 |
T |
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