View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4012_low_47 (Length: 252)
Name: NF4012_low_47
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_47 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 3922211 - 3922429
Alignment:
| Q |
15 |
cacagaacaccaaaaatataaatgtagctcttggatccctccaactgatcagagattgtagcttttctaaaatggtggccaattcatcaacccttttttg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3922211 |
cacagaacaccaaaaatataaatgtagctcttggatccctccaactgatcagagattgtagcttttctaaaatggtggccaattcatcaacccttttttg |
3922310 |
T |
|
| Q |
115 |
tccattcctaccaatgactctcaacctatcatacctccttctcaaatgttcacctccaatttgagttggaaagaaatcaagttcttcttctaaatcatca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3922311 |
tccattcctaccaatgactctcaacctatcatacctccttctcaaatgttcacctccaatttgagttggaaagaaaacaagttcttcttctaaatcatca |
3922410 |
T |
|
| Q |
215 |
taatttgttgtatcagcac |
233 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
3922411 |
taatttgttgtatcagcac |
3922429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 46 - 233
Target Start/End: Complemental strand, 34958404 - 34958217
Alignment:
| Q |
46 |
tggatccctccaactgatcagagattgtagcttttctaaaatggtggccaattcatcaacccttttttgtccattcctaccaatgactctcaacctatca |
145 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
34958404 |
tggatccctccaactgatcagaaattgtagcttttctaaaatggtagctaattgatcaacccttttttgtgcattcctgccaatgactctcaacctatca |
34958305 |
T |
|
| Q |
146 |
tacctccttctcaaatgttcacctccaatttgagttggaaagaaatcaagttcttcttctaaatcatcataatttgttgtatcagcac |
233 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34958304 |
tacctccttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcagaatttgttgtatcagcac |
34958217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University