View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_51 (Length: 242)
Name: NF4012_low_51
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 29341595 - 29341811
Alignment:
| Q |
19 |
attgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgaga |
118 |
Q |
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| T |
29341595 |
attgcttcaagggatgctaccatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcaaaaaaaggggtttaataggactcgaga |
29341694 |
T |
|
| Q |
119 |
atgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29341695 |
atgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgt |
29341794 |
T |
|
| Q |
219 |
ttttgagagaccctttg |
235 |
Q |
| |
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||||||||||||||||| |
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| T |
29341795 |
ttttgagagaccctttg |
29341811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 29357622 - 29357838
Alignment:
| Q |
19 |
attgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgaga |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
29357622 |
attgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatctttctttggtatgctctcaaaaaaaggggtttaataggactcgaga |
29357721 |
T |
|
| Q |
119 |
atgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357722 |
atgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgt |
29357821 |
T |
|
| Q |
219 |
ttttgagagaccctttg |
235 |
Q |
| |
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||||||||||||||||| |
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| T |
29357822 |
ttttgagagaccctttg |
29357838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 44660188 - 44659976
Alignment:
| Q |
19 |
attgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgaga |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||| || | |
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| T |
44660188 |
attgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcccatcttcctttggtatgctctcaaaaaaaggggtttaataggacttgaaa |
44660089 |
T |
|
| Q |
119 |
atgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgt |
218 |
Q |
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|||| || |||||||| |||| ||| |||| ||| |||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||||||| |
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| T |
44660088 |
atgaggtgcatgaatgtataatgaaagcacattatttactaaatctactacgtgatgctggaattggtgctatgttaaacaaatttagcaacatagttgt |
44659989 |
T |
|
| Q |
219 |
ttttgagagaccc |
231 |
Q |
| |
|
|||||||||||| |
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| T |
44659988 |
gtttgagagaccc |
44659976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 44683333 - 44683125
Alignment:
| Q |
19 |
attgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgaga |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||| || | |
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| T |
44683333 |
attgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcccatcttcctttggtatgctctcaaaaaaaggggtttaataggacttgaaa |
44683234 |
T |
|
| Q |
119 |
atgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgt |
218 |
Q |
| |
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|||| || |||||||| |||| ||| |||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
44683233 |
atgaggtgcatgaatgtataatgaaagcacattatttactaaatctactacgtgatgctggaattggtgctatgttaaacgagttcagcaacatagttgt |
44683134 |
T |
|
| Q |
219 |
ttttgagag |
227 |
Q |
| |
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|||||||| |
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| T |
44683133 |
atttgagag |
44683125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 226
Target Start/End: Complemental strand, 44640321 - 44640141
Alignment:
| Q |
46 |
ggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgagaatgaagtacatgaatgcataacgaatg |
145 |
Q |
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||||| || ||||| |||||||||||||| |||||||||||| | | ||| | ||||||||| | |||||||| ||| ||||||| | ||||| |
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| T |
44640321 |
ggtagtcgaagtggtcatgctccaatctttctttggtatgctttgcaaaaaagaggtatcataggactccaaaatgaagtgcataaatgcatgatgaatg |
44640222 |
T |
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| Q |
146 |
cacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgaga |
226 |
Q |
| |
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|||||||||| | | | |||| |||||||||||||||||| |||||||||| || |||||||||| |||||||||||||| |
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| T |
44640221 |
cacgttacttgcaacgtaaacttcgtgatgctggaattggtacaatgttaaatgaatttagcaacacagttgtttttgaga |
44640141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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