View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4012_low_55 (Length: 226)
Name: NF4012_low_55
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_55 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 6717281 - 6717415
Alignment:
| Q |
12 |
caaagggtggtgtttgttttggtcagaatttaaggttgaagaaaggtggtggaataggtttgaaagctattcaggctgaacctgttagagaggtgaagaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
6717281 |
caaagggtggtgtttgttttggtcagaatttaaggttgaagaaaggtggtggaataggtttgaaagctattcatgctgaacctgttagagagatgaagaa |
6717380 |
T |
|
| Q |
112 |
caagccttctggatctagaacaagatccaagcagg |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6717381 |
caagccttctggatctagaacaagatccaagcagg |
6717415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University