View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_59 (Length: 217)
Name: NF4012_low_59
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 20488217 - 20488018
Alignment:
| Q |
1 |
cagaagcagttagtaacattcttaggaggatgacacaactttggacaatcagaatcagaatggcagaattcaccaaatgctgtgatgtaaaaacaagaat |
100 |
Q |
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| T |
20488217 |
cagaagcagttagtaacattcttaggaggatgacacaactttggacaatcagaatcagaatggcagaattcaccaaatgctgtgatgtaaaaacaagaat |
20488118 |
T |
|
| Q |
101 |
aaaacagtgtcattactcatttaaactgactcaatttttgtataagattaataacaaaaatataagnnnnnnntcataccgtagatttcagcgacaatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20488117 |
aaaacagtgtcattactcatttaaactgactcaatttttgtataagattaataacaaaaatataagaaaaaaatcataccgtagatttcagcgacaatag |
20488018 |
T |
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