View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_low_7 (Length: 568)
Name: NF4012_low_7
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 94 - 549
Target Start/End: Complemental strand, 34377775 - 34377319
Alignment:
| Q |
94 |
aacggtgtgtttcataaaagaagttgattggataaaaaa-tttgatgtgtgatagtgtactaagaaggaaaaagttataataattcatacctcacaccaa |
192 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
34377775 |
aacggtgtgtttcataaaagaagttgcttggataaaaaaatttgatgtgtgatagtgtactaagaaggagaaagttgtaataattcatacctcacaccaa |
34377676 |
T |
|
| Q |
193 |
acacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctacataaatctct-tcaagacctggagtg |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||| | || |||||||||| |
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|
| T |
34377675 |
acacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctatgtcaaatttggtatcttctacacaaat-tctataaatacctggagtg |
34377577 |
T |
|
| Q |
292 |
tataagattccttcgtaccaaaaggtcttcatctctggacagtcattaattagtatcaactcacattttggcatctcaacatagcaagggaaatagcttt |
391 |
Q |
| |
|
|| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||| |||||| |
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| T |
34377576 |
tacaagattccattgtaccaaaaggtcttcatctctggacagtcattaattagtatccactcacatgctggcatctcaacgtagcaatggaaagagcttt |
34377477 |
T |
|
| Q |
392 |
cactgaaacatttgaggctaggaagcttctctagtaatattttcctcagctttgggaatttaatcttagctttctgttgtaaacaattattcccaatgat |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34377476 |
cactgaaacatttgaggctaggaagcttctttagtttaattttcatcagctttgggaatttaatcttagctttctgttgtaaacaattattcccaatgat |
34377377 |
T |
|
| Q |
492 |
ctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtg |
549 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
34377376 |
ctccttcatcttctcgcattcagacacatgaatcgacatcaaacttggaaggcttgtg |
34377319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 165 - 549
Target Start/End: Original strand, 34549677 - 34550061
Alignment:
| Q |
165 |
agttataataattcatacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttct |
264 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34549677 |
agttgtaataattcatacctcacaccaaacactcaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttagtattttct |
34549776 |
T |
|
| Q |
265 |
acataaatctcttcaagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctggacagtcattaattagtatcaactcacattttggca |
364 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
34549777 |
acataaatctcttcaagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctgggcagtcattaattactatcaactcacattttggca |
34549876 |
T |
|
| Q |
365 |
tctcaacatagcaagggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaatattttcctcagctttgggaatttaatcttagcttt |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| ||||||||||||||||| |
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|
| T |
34549877 |
tctcaacatagcaagggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaatatttcctccaatattggaaatttaatcttagcttt |
34549976 |
T |
|
| Q |
465 |
ctgttgtaaacaattattcccaatgatctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtg |
549 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34549977 |
ctgttgtgaacaattattcctaatgatctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtg |
34550061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34377872 - 34377810
Alignment:
| Q |
1 |
agaatgggaagggaaaatgaatgaaggaaataatgtgtagctagcttctagacagtgctgttg |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34377872 |
agaatgggaagggaaaatgaatgaaggaaataatgtgtagctagcttctagacagtgctgttg |
34377810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 179 - 478
Target Start/End: Complemental strand, 135193 - 134895
Alignment:
| Q |
179 |
atacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctacataaatctcttc |
278 |
Q |
| |
|
|||||||| ||||| ||| | |||||||||| |||||||||||||| |||||||||||||| | || ||||||||||||||||| || | |||| || | |
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|
| T |
135193 |
atacctcataccaa-cactcgatcatttattgtgtcgttgtatcacgtcattaacatcttcgtattcgtcaaatttggtattttttaaagaaatttcata |
135095 |
T |
|
| Q |
279 |
aagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctggacagtcattaattagtatcaactcacattttggcatctcaacatagcaa |
378 |
Q |
| |
|
||||| ||| |||||||||||||||||| |||||||||||||||||||||| ||||| | |||| ||| | ||||| ||||||||||| ||||||| |
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|
| T |
135094 |
aagacgtggggtgtataagattccttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttattcgccgacattgtggcatctcaatatagcaa |
134995 |
T |
|
| Q |
379 |
gggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaatattttcctcagctttgggaatttaatcttagctttctgttgtaaacaat |
478 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||||||||| ||| || ||| | | || ||||||||||| |||||||||||||||| ||||| |
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|
| T |
134994 |
gggaaagagctttgaccgaaacatttgaggctaggaagcttctgcagttcaatcttcattaatttcgggaatttaattttagctttctgttgtacacaat |
134895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 475 - 549
Target Start/End: Complemental strand, 134883 - 134809
Alignment:
| Q |
475 |
caattattcccaatgatctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtg |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||| ||| || |||| |||||| ||||||| |
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|
| T |
134883 |
caattattcccaatgatctccttcatcttctggcattcatacacaccaattaaccacaaatttggaatgcttgtg |
134809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 520
Target Start/End: Complemental strand, 157400 - 157356
Alignment:
| Q |
476 |
aattattcccaatgatctccttcatcttctcgcattcagacacac |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
157400 |
aattattcccaatgatctccttcatcttctggcattcatacacac |
157356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 6111162 - 6111193
Alignment:
| Q |
1 |
agaatgggaagggaaaatgaatgaaggaaata |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
6111162 |
agaatgggaagggaaaatgaatgaaggaaata |
6111193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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