View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4012_low_9 (Length: 520)

Name: NF4012_low_9
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4012_low_9
NF4012_low_9
[»] chr2 (20 HSPs)
chr2 (130-362)||(1895402-1895634)
chr2 (138-362)||(17281850-17282075)
chr2 (144-362)||(1551510-1551728)
chr2 (130-360)||(17375271-17375501)
chr2 (249-362)||(3921584-3921697)
chr2 (439-510)||(1895254-1895325)
chr2 (443-504)||(1551809-1551870)
chr2 (445-502)||(17282158-17282215)
chr2 (289-362)||(34660278-34660351)
chr2 (443-502)||(3921444-3921503)
chr2 (443-500)||(17375153-17375210)
chr2 (187-239)||(3921684-3921736)
chr2 (443-502)||(4869507-4869566)
chr2 (15-52)||(1895712-1895749)
chr2 (289-362)||(4869637-4869710)
chr2 (449-501)||(14950835-14950887)
chr2 (168-234)||(4869709-4869775)
chr2 (9-52)||(1551367-1551410)
chr2 (14-52)||(17281727-17281765)
chr2 (130-175)||(4140576-4140621)
[»] chr4 (19 HSPs)
chr4 (130-362)||(53202258-53202490)
chr4 (130-365)||(47518349-47518584)
chr4 (130-362)||(23054132-23054363)
chr4 (183-340)||(6410005-6410163)
chr4 (271-362)||(34227057-34227148)
chr4 (443-502)||(53202118-53202177)
chr4 (443-502)||(47518662-47518721)
chr4 (439-507)||(23054441-23054508)
chr4 (443-504)||(34227204-34227265)
chr4 (4-52)||(53202568-53202616)
chr4 (292-357)||(12469342-12469407)
chr4 (449-501)||(45873102-45873154)
chr4 (455-498)||(12489216-12489259)
chr4 (198-244)||(24957572-24957618)
chr4 (292-340)||(12466698-12466746)
chr4 (449-501)||(14441115-14441167)
chr4 (449-499)||(12130516-12130566)
chr4 (449-501)||(38093215-38093267)
chr4 (449-501)||(55728692-55728744)
[»] chr6 (5 HSPs)
chr6 (144-362)||(20740570-20740788)
chr6 (130-362)||(21881459-21881691)
chr6 (439-504)||(20740453-20740518)
chr6 (443-502)||(21881318-21881377)
chr6 (449-501)||(32747716-32747768)
[»] chr5 (26 HSPs)
chr5 (130-362)||(7766903-7767135)
chr5 (134-365)||(18696922-18697155)
chr5 (141-362)||(27169997-27170219)
chr5 (252-339)||(41355543-41355630)
chr5 (439-502)||(38958379-38958442)
chr5 (443-498)||(41355722-41355777)
chr5 (130-234)||(7271894-7271995)
chr5 (130-239)||(41355444-41355553)
chr5 (291-362)||(38958230-38958301)
chr5 (296-362)||(7271826-7271892)
chr5 (289-362)||(6030388-6030461)
chr5 (443-502)||(7271708-7271767)
chr5 (443-497)||(27170275-27170329)
chr5 (449-501)||(26331217-26331269)
chr5 (443-502)||(26656630-26656688)
chr5 (443-502)||(26928217-26928275)
chr5 (443-498)||(40599985-40600040)
chr5 (168-234)||(6030323-6030389)
chr5 (168-234)||(26656829-26656895)
chr5 (168-234)||(26928416-26928482)
chr5 (463-501)||(42221388-42221426)
chr5 (443-498)||(7767203-7767255)
chr5 (449-501)||(24867205-24867257)
chr5 (289-339)||(26656780-26656830)
chr5 (289-339)||(26928367-26928417)
chr5 (4-52)||(18697228-18697276)
[»] chr8 (9 HSPs)
chr8 (130-365)||(10408814-10409049)
chr8 (138-362)||(5994622-5994846)
chr8 (183-362)||(6444027-6444207)
chr8 (449-501)||(5994485-5994537)
chr8 (443-502)||(10408702-10408761)
chr8 (449-501)||(15050162-15050214)
chr8 (454-498)||(3763045-3763089)
chr8 (9-41)||(10409137-10409169)
chr8 (449-501)||(25142902-25142954)
[»] chr1 (17 HSPs)
chr1 (130-335)||(34117991-34118198)
chr1 (130-240)||(39708920-39709029)
chr1 (138-239)||(34655070-34655171)
chr1 (249-365)||(34654967-34655083)
chr1 (183-339)||(11407935-11408092)
chr1 (443-502)||(34654830-34654889)
chr1 (251-361)||(26236671-26236781)
chr1 (249-339)||(39709015-39709105)
chr1 (289-362)||(615753-615826)
chr1 (439-502)||(39709180-39709243)
chr1 (168-234)||(615825-615891)
chr1 (444-504)||(34117896-34117955)
chr1 (443-496)||(615638-615691)
chr1 (449-498)||(11814695-11814744)
chr1 (449-497)||(2077483-2077531)
chr1 (449-501)||(14351174-14351226)
chr1 (4-44)||(39708650-39708690)
[»] chr7 (4 HSPs)
chr7 (139-362)||(3302567-3302790)
chr7 (443-502)||(11698554-11698613)
chr7 (443-502)||(3302427-3302486)
chr7 (449-501)||(31039000-31039052)
[»] chr3 (6 HSPs)
chr3 (289-362)||(18269763-18269836)
chr3 (443-502)||(43275830-43275890)
chr3 (455-507)||(18269919-18269971)
chr3 (449-498)||(31699221-31699270)
chr3 (183-234)||(18269713-18269764)
chr3 (288-334)||(43275999-43276045)
[»] scaffold0157 (1 HSPs)
scaffold0157 (455-498)||(31218-31261)
[»] scaffold0027 (1 HSPs)
scaffold0027 (449-501)||(2938-2989)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 130 - 362
Target Start/End: Complemental strand, 1895634 - 1895402
Alignment:
Q  130 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 229  Q
    |||||||||||||||||||||||||| |||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1895634 atgcttgtcggtggttgtttggtttttgtgggtctcagactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 1895535  T
Q  230 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 329  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1895534 gtgattgatcggtcatgatggtggtgatgagtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtact 1895435  T
Q  330 tcatggtggttttcttggtggtactgattttgg 362  Q
    ||||||||||||||||||||||| |||||||||    
T  1895434 tcatggtggttttcttggtggtattgattttgg 1895402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 138 - 362
Target Start/End: Original strand, 17281850 - 17282075
Alignment:
Q  138 cggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattga 237  Q
    ||||||||||||| ||||||| ||| ||| |||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||||||| ||    
T  17281850 cggtggttgtttgtttttcgtaggtctcagactatttgatttgttttctctcttggtagtggtggaggttatgtttgctcgcaacataggtggtgatgga 17281949  T
Q  238 tcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttag-tttgtggtacttcatggt 336  Q
    || ||||  ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  17281950 tcagtcacaatggtggtgatggatcatatctaggtttgcttatgaacttatatggtttcgatggatctttggttgtgttggttttgtggtacttcatggt 17282049  T
Q  337 ggttttcttggtggtactgattttgg 362  Q
    ||||||||||||||| ||||||||||    
T  17282050 ggttttcttggtggtgctgattttgg 17282075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 144 - 362
Target Start/End: Original strand, 1551510 - 1551728
Alignment:
Q  144 ttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtc 243  Q
    ||||||| ||||||||||| ||| |||||||||||| | |||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||| |||    
T  1551510 ttgtttgattttcgtgggtctcagactatttgatttgttttctctattggttgtggtggatgttatgtttgctcgcaacataggtggtgatggatcagtc 1551609  T
Q  244 atgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttc 343  Q
    | |||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  1551610 acgatggtggtgatggatcatgtataggttcgcttatgaacttatatagtttcgatggatctttggttgtgttggtttgtggtacttcgtggtggttttc 1551709  T
Q  344 ttggtggtactgattttgg 362  Q
    ||||| || ||||||||||    
T  1551710 ttggtagtgctgattttgg 1551728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 130 - 360
Target Start/End: Complemental strand, 17375501 - 17375271
Alignment:
Q  130 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 229  Q
    |||| |||||||||||||||||||||||||| | ||| |||||||||||  | |||||| |||||||||||||||||||||| ||||| |||||||||||    
T  17375501 atgcctgtcggtggttgtttggttttcgtggctctcacactatttgattcgttttctctattggttgtggtggaggttatgtttgctcacaacataggtg 17375402  T
Q  230 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 329  Q
    ||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||||| ||    
T  17375401 gtgatggatcgatcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatggtttcgatgaatctttggttgtgttggtttgtggtgct 17375302  T
Q  330 tcatggtggttttcttggtggtactgatttt 360  Q
    |||||   |||||| ||||||| ||||||||    
T  17375301 tcatgacagttttcatggtggtgctgatttt 17375271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 249 - 362
Target Start/End: Complemental strand, 3921697 - 3921584
Alignment:
Q  249 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 348  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||||    
T  3921697 ggtggtgatggatcatatctaagttcgcttatgaacttatatggttttgatggatgtttggttgtgttggtttgtggtacttcacggtggttttcttggt 3921598  T
Q  349 ggtactgattttgg 362  Q
    ||| ||||||||||    
T  3921597 ggtgctgattttgg 3921584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 439 - 510
Target Start/End: Complemental strand, 1895325 - 1895254
Alignment:
Q  439 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatgatg 510  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  1895325 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtgttcaatggtagttttggtgatggtgatg 1895254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 443 - 504
Target Start/End: Original strand, 1551809 - 1551870
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 504  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1551809 tgttgcttttaggtgagggttaatggtgatttttgaggtggtcaatggtagttttggtgatg 1551870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 502
Target Start/End: Original strand, 17282158 - 17282215
Alignment:
Q  445 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17282158 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtaggtttggtga 17282215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 34660351 - 34660278
Alignment:
Q  289 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 362  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  34660351 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 34660278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 3921503 - 3921444
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3921503 tgttgcttttaggtgagggttaatggtgatttttgtggtggtaaatagtagttttggtga 3921444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 443 - 500
Target Start/End: Complemental strand, 17375210 - 17375153
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggt 500  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  17375210 tgttgctttttggtgagggttaattgtggtttttgtggtggtcaatggtagttttggt 17375153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 3921736 - 3921684
Alignment:
Q  187 ctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatc 239  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  3921736 ctcttggttgtggtggatgttatgtttgctcgcaacataggtggtgatggatc 3921684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 4869566 - 4869507
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    ||||||||||  |||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  4869566 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtagtttttgtga 4869507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 1895749 - 1895712
Alignment:
Q  15 tacctttccgacgtgcggttgctctctatcgtcgtaaa 52  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1895749 tacctttccgacgtgcggttgctctctatcgtcgtaaa 1895712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 4869710 - 4869637
Alignment:
Q  289 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 362  Q
    ||||||| ||||||||||||||||| || ||||| ||| |||||||| ||||||| || |||| ||||||||||    
T  4869710 atggttttgatggatctttggttgttttggtttgcggtgcttcatggcggttttcatgatggtgctgattttgg 4869637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 14950835 - 14950887
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  14950835 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 14950887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 4869775 - 4869709
Alignment:
Q  168 actatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 234  Q
    |||||||||||  | |||||||||||||| ||||||||||| || || | |||||||||||||||||    
T  4869775 actatttgattcgttttctctcttggttgcggtggaggttacgtttgatagcaacataggtggtgat 4869709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 1551367 - 1551410
Alignment:
Q  9 ccactgtacctttccgacgtgcggttgctctctatcgtcgtaaa 52  Q
    |||| |||||||||||||||||||||||||||  ||||||||||    
T  1551367 ccaccgtacctttccgacgtgcggttgctctccgtcgtcgtaaa 1551410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 17281727 - 17281765
Alignment:
Q  14 gtacctttccgacgtgcggttgctctctatcgtcgtaaa 52  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  17281727 gtacctttccgacgtgcggttgctctatgtcgtcgtaaa 17281765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 4140621 - 4140576
Alignment:
Q  130 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttg 175  Q
    ||||||| |||||||| |||||||||||||||| ||| ||||||||    
T  4140621 atgcttgccggtggttctttggttttcgtgggtctcagactatttg 4140576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 130 - 362
Target Start/End: Complemental strand, 53202490 - 53202258
Alignment:
Q  130 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 229  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||    
T  53202490 atgcttgtctgtggttgtttggttttcgtgggtctcaaactatttgatttgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtg 53202391  T
Q  230 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 329  Q
    ||||  ||||||||| |||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  53202390 gtgacagatcggtcacgatggtggtgatgaatcatatctagattcgcttatgaacttatatggtttcgatggatctttggttgtattggtttgtggtact 53202291  T
Q  330 tcatggtggttttcttggtggtactgattttgg 362  Q
    ||||| ||||||||||||||||  |||||||||    
T  53202290 tcatgatggttttcttggtggtgttgattttgg 53202258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 130 - 365
Target Start/End: Original strand, 47518349 - 47518584
Alignment:
Q  130 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 229  Q
    ||||||||||||||||||||||||||| ||||| ||| |||||||||||| | ||||||||  ||||||||||||||||||| |||||||||||||||||    
T  47518349 atgcttgtcggtggttgtttggttttcatgggtctcagactatttgatttgttttctctctatgttgtggtggaggttatgtttgctcgcaacataggtg 47518448  T
Q  230 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 329  Q
    ||||| |||| ||||  ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47518449 gtgatggatcagtcacaatggtggtgatgaatcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttcgtttgtggtact 47518548  T
Q  330 tcatggtggttttcttggtggtactgattttggatc 365  Q
    |||||||||||||||||||| | |||||||||||||    
T  47518549 tcatggtggttttcttggtgttgctgattttggatc 47518584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 130 - 362
Target Start/End: Original strand, 23054132 - 23054363
Alignment:
Q  130 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 229  Q
    ||||||||| ||||||||||||||||||||||| | | |||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||    
T  23054132 atgcttgtcagtggttgtttggttttcgtgggtctgagactatttgatttgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtg 23054231  T
Q  230 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 329  Q
    ||||| |||| |||| |||||| ||| ||| |||||||| ||||||||||||||||  ||||||||| ||||||||||||||||||| ||| ||||| ||    
T  23054232 gtgatggatcagtcacgatggt-gtgctggatcatatctcggttcgcttatgaactgttatggtttcaatggatctttggttgtgttggttcgtggtgct 23054330  T
Q  330 tcatggtggttttcttggtggtactgattttgg 362  Q
    | |||| ||||||| ||||||| ||||||||||    
T  23054331 ttatggcggttttcatggtggtgctgattttgg 23054363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 183 - 340
Target Start/End: Complemental strand, 6410163 - 6410005
Alignment:
Q  183 ttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatg 281  Q
    |||||||||||| |||| |||||||||||| ||||||||| |||||||||||| ||||||||| || ||||| ||| | ||| ||||  |||||||||||    
T  6410163 ttctctcttggtggtggatggaggttatgtttgctcgcaaaataggtggtgatggatcggtcacgaaggtggcgatcgatcagatctgagttcgcttatg 6410064  T
Q  282 aacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 340  Q
    | ||  ||||||||||||| ||||| ||||||||| ||||||||| |||||||||||||    
T  6410063 atctattatggtttcgatgaatcttgggttgtgttggtttgtggtgcttcatggtggtt 6410005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 271 - 362
Target Start/End: Original strand, 34227057 - 34227148
Alignment:
Q  271 gttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 362  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||||| ||||||||||    
T  34227057 gttcgcttatgaacttatatggtttcaatggatctttggttgtgttggtctgtggtacttcatggtggctttcttggtggtgctgattttgg 34227148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 53202177 - 53202118
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53202177 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 53202118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 443 - 502
Target Start/End: Original strand, 47518662 - 47518721
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47518662 tgttgcttttaggtgagggttaatagtgatttttgtggtggtcaatggtagttttggtga 47518721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 439 - 507
Target Start/End: Original strand, 23054441 - 23054508
Alignment:
Q  439 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 507  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  23054441 ctgatgttgcttttaggtgagggttaatggtg-gttttgtggtggtcaatggtagttttggtgacgatg 23054508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 443 - 504
Target Start/End: Original strand, 34227204 - 34227265
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 504  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  34227204 tgttgcttttaggtgagggttaatggtggttttcgtgatggtcaatggtagttttagtgatg 34227265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 53202616 - 53202568
Alignment:
Q  4 ccgccccactgtacctttccgacgtgcggttgctctctatcgtcgtaaa 52  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||    
T  53202616 ccgcaccaccgtacctttccgacgtgcggttgctctctatcgtcgtaaa 53202568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 12469342 - 12469407
Alignment:
Q  292 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgat 357  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||||  | ||||||| |||||    
T  12469342 gtttcgatggatccttggttgtgttggtttgtggtccttcatggtggttaccatggtggtgctgat 12469407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 501
Target Start/End: Complemental strand, 45873154 - 45873102
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  45873154 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 45873102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 498
Target Start/End: Original strand, 12489216 - 12489259
Alignment:
Q  455 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 498  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  12489216 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 12489259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 24957572 - 24957618
Alignment:
Q  198 ggtggaggttatgtctgctcgcaacataggtggtgattgatcggtca 244  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||    
T  24957572 ggtggaggttatgtttgctcgcaacataggtggtgatgtatcggtca 24957618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 12466698 - 12466746
Alignment:
Q  292 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 340  Q
    ||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  12466698 gtttcgatggatccttggttatgttggtttgtggtccttcatggtggtt 12466746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 501
Target Start/End: Complemental strand, 14441167 - 14441115
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  14441167 tttttggtgaggattaatggtggtttttgtgctggttaatggtagttttggtg 14441115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 499
Target Start/End: Complemental strand, 12130566 - 12130516
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttgg 499  Q
    |||| ||||||| |||||| |  ||||||||||||||||||||||||||||    
T  12130566 tttttggtgaggattaatgatagtttttgtggtggtcaatggtagttttgg 12130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 501
Target Start/End: Complemental strand, 38093267 - 38093215
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||| ||||||| || |||||| ||||||||||||| | ||||||||||||||    
T  38093267 tttttggtgaggatttatggtgttttttgtggtggttattggtagttttggtg 38093215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 501
Target Start/End: Complemental strand, 55728744 - 55728692
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| || ||||||||    
T  55728744 tttttggtgaggattaatggtggtttttgtggtggttaatgataattttggtg 55728692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 3e-89; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 144 - 362
Target Start/End: Complemental strand, 20740788 - 20740570
Alignment:
Q  144 ttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtc 243  Q
    ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| ||||    
T  20740788 ttgtttggttttcgtgggtctcaaactatttgatttgttttctctcttggttgtggtggatgttatgtttgctcgcaacataggtggtgatggattggtc 20740689  T
Q  244 atgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttc 343  Q
    | |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  20740688 acgatggtggtgatggatcatatctaggttcggttatgaacttatatggtttcgatggatctttggttgtgttggtttatggtacttcatggtggttttc 20740589  T
Q  344 ttggtggtactgattttgg 362  Q
    |||||||| ||||||||||    
T  20740588 ttggtggtgctgattttgg 20740570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 130 - 362
Target Start/End: Complemental strand, 21881691 - 21881459
Alignment:
Q  130 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 229  Q
    |||||||||||| |||||||||||||||||| | ||| |||||||||||  | ||||||||||| ||||| ||||||||||| ||||||||||| |||||    
T  21881691 atgcttgtcggtcgttgtttggttttcgtggctctcagactatttgattcgttttctctcttggctgtggcggaggttatgtttgctcgcaacaaaggtg 21881592  T
Q  230 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 329  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||| |||| ||||||||| ||    
T  21881591 gtgatggatcggtcacgatggtggtgatggatcatatctaggttcgcttatgaactgctatggtttcgatgaatctttggttatgttggtttgtggtgct 21881492  T
Q  330 tcatggtggttttcttggtggtactgattttgg 362  Q
    ||||||  ||| || ||||||| ||||||||||    
T  21881491 tcatggcagttatcatggtggtgctgattttgg 21881459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 439 - 504
Target Start/End: Complemental strand, 20740518 - 20740453
Alignment:
Q  439 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 504  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20740518 ctgatgttgcttttaggtgaaggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 20740453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 21881377 - 21881318
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  21881377 tgttgctttttggtgagggttaatcgtgatttttgtggtggtcaatgctagttttggtga 21881318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 32747716 - 32747768
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  32747716 tttttggtgaggtgtaatggtggtttttgtggtggttaatggtagttttggtg 32747768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 130 - 362
Target Start/End: Original strand, 7766903 - 7767135
Alignment:
Q  130 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 229  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||||||| | |||||||||||||||| |||||||||||| |||||||||||||||||    
T  7766903 atgcttgccggtggttgtttggttttcgtgggtctcagactatttgatttgttttctctcttggttgtgatggaggttatgtttgctcgcaacataggtg 7767002  T
Q  230 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 329  Q
    |||||||||||| ||  ||||||||||||| |||||||||||||| |||||||| |  ||||||||||||||||||||||||||||| ||||||||| ||    
T  7767003 gtgattgatcggccacaatggtggtgatggatcatatctaggttcacttatgaattgttatggtttcgatggatctttggttgtgttggtttgtggtgct 7767102  T
Q  330 tcatggtggttttcttggtggtactgattttgg 362  Q
    |||||| || |||| |||||||  |||||||||    
T  7767103 tcatggcgggtttcatggtggtgttgattttgg 7767135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 134 - 365
Target Start/End: Complemental strand, 18697155 - 18696922
Alignment:
Q  134 ttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtg--gtggaggttatgtctgctcgcaacataggtggt 231  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||| | || | | |||||||||  ||||||||||||| ||| |||||||||||||||    
T  18697155 ttgtcggtggttgtttggttttcgtgggtctcagactatttgatttgttttttatattggttgtgtggtggaggttatgtttgcccgcaacataggtggt 18697056  T
Q  232 gattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttc 331  Q
    ||| |||| |||| |||||||||||||| |||||||||||||||||||||||||  ||||| |||| |||||||||||||||||| ||||||||| ||||    
T  18697055 gatggatcagtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatgggttcggtggatctttggttgtgttggtttgtggtgcttc 18696956  T
Q  332 atggtggttttcttggtggtactgattttggatc 365  Q
    |||| | ||||| ||||| | |||||||||||||    
T  18696955 atggcgtttttcatggtgttgctgattttggatc 18696922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 141 - 362
Target Start/End: Original strand, 27169997 - 27170219
Alignment:
Q  141 tggttgtttggttttcgtgggtatcaaactatttgatttctctt-ctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatc 239  Q
    |||||||||||||||||||||| |||  ||||||||||  | || ||||||||||||||||||||||||||| |||||||||| || |||||||| ||||    
T  27169997 tggttgtttggttttcgtgggtctcaggctatttgattcgtttttctctcttggttgtggtggaggttatgtttgctcgcaacgtaagtggtgatggatc 27170096  T
Q  240 ggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 339  Q
    ||||| ||||||||| |||| |||||| | | ||  |||| |||||  ||||||||||||||||||||||||||||| ||||||||| |||||||| |||    
T  27170097 ggtcacgatggtggtaatggatcatatttggctttacttacgaactgttatggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggt 27170196  T
Q  340 tttcttggtggtactgattttgg 362  Q
    |||| ||||||| || |||||||    
T  27170197 tttcatggtggtgctaattttgg 27170219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 252 - 339
Target Start/End: Original strand, 41355543 - 41355630
Alignment:
Q  252 ggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 339  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41355543 ggtgatggatcatatctatgttcgctcatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtacttcatggtggt 41355630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 439 - 502
Target Start/End: Original strand, 38958379 - 38958442
Alignment:
Q  439 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38958379 ctgacgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 38958442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 443 - 498
Target Start/End: Original strand, 41355722 - 41355777
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41355722 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 41355777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 7271995 - 7271894
Alignment:
Q  130 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 229  Q
    ||||||||| ||||||||||||||||  ||||  |   |||||||||||  | ||||||||||||||||||||||||||||| |||||||||||||||||    
T  7271995 atgcttgtcagtggttgtttggttttattggggct---actatttgattcgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtg 7271899  T
Q  230 gtgat 234  Q
    |||||    
T  7271898 gtgat 7271894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 41355444 - 41355553
Alignment:
Q  130 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 229  Q
    ||||||| |||||||||||| |||| ||||| | | |  ||||||||||| | ||||||||||||||||||||||||||| | ||||||||||||||| |    
T  41355444 atgcttgccggtggttgtttagtttccgtggatcttaggctatttgatttgttttctctcttggttgtggtggaggttatatttgctcgcaacataggcg 41355543  T
Q  230 gtgattgatc 239  Q
    ||||| ||||    
T  41355544 gtgatggatc 41355553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 362
Target Start/End: Original strand, 38958230 - 38958301
Alignment:
Q  291 ggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 362  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||| ||||||||||    
T  38958230 ggtttcgatggatctttggttgtgttggtttgtgatacttcatggtggtttttttgatggtgctgattttgg 38958301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 7271892 - 7271826
Alignment:
Q  296 cgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 362  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  7271892 cgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 7271826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 6030388 - 6030461
Alignment:
Q  289 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 362  Q
    |||||||||||||||||||||||||||| ||||||||| |||| ||  ||||||| ||||||| ||||||||||    
T  6030388 atggtttcgatggatctttggttgtgttggtttgtggtgcttcctgacggttttcatggtggtgctgattttgg 6030461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 7271767 - 7271708
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    ||||||||||  |||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  7271767 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtacttttggtga 7271708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 27170275 - 27170329
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 497  Q
    |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||    
T  27170275 tgttgctttttggtgaggattaatggtggtttttgtggtggttaatggtagtttt 27170329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 26331217 - 26331269
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  26331217 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 26331269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 26656688 - 26656630
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26656688 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26656630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 26928275 - 26928217
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26928275 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26928217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 498
Target Start/End: Original strand, 40599985 - 40600040
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 498  Q
    ||||| |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  40599985 tgttgatttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 40600040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 6030323 - 6030389
Alignment:
Q  168 actatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 234  Q
    |||||||||||  | |||||||||||||| |||||| ||||||| || ||| |||||||||||||||    
T  6030323 actatttgattcgttttctctcttggttgcggtggatgttatgtttgatcggaacataggtggtgat 6030389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 26656895 - 26656829
Alignment:
Q  168 actatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 234  Q
    |||||||||||  | ||||||||||||||| ||| ||||||||| ||||||||| ||| ||||||||    
T  26656895 actatttgattcgttttctctcttggttgttgtgaaggttatgtttgctcgcaatataagtggtgat 26656829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 26928482 - 26928416
Alignment:
Q  168 actatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 234  Q
    |||||||||||  | ||||||||||||||| ||| ||||||||| ||||||||| ||| ||||||||    
T  26928482 actatttgattcgttttctctcttggttgttgtgaaggttatgtttgctcgcaatataagtggtgat 26928416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 501
Target Start/End: Complemental strand, 42221426 - 42221388
Alignment:
Q  463 taatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  42221426 taatggtgatttttgtggtggttaatggtagttttggtg 42221388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 443 - 498
Target Start/End: Original strand, 7767203 - 7767255
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 498  Q
    |||||||||||||||||||||   |||| |||||||||||||||||| ||||||||    
T  7767203 tgttgcttttaggtgagggtt---ggtggtttttgtggtggtcaatgatagttttg 7767255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 24867205 - 24867257
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  24867205 tttttggtgaggattaatggtggtttttgtgttggttaatggtagttttggtg 24867257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 26656830 - 26656780
Alignment:
Q  289 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 339  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26656830 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26656780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 26928417 - 26928367
Alignment:
Q  289 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 339  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26928417 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26928367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 18697276 - 18697228
Alignment:
Q  4 ccgccccactgtacctttccgacgtgcggttgctctctatcgtcgtaaa 52  Q
    |||| |||| |||| ||||||||||||||||||||| | ||||||||||    
T  18697276 ccgcaccaccgtacatttccgacgtgcggttgctctttgtcgtcgtaaa 18697228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 130 - 365
Target Start/End: Complemental strand, 10409049 - 10408814
Alignment:
Q  130 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 229  Q
    |||||||| ||||||| ||||||||| |||||| |||||||||||||||| |  |||||||||||||||||||||||||||| |||||||||||||||||    
T  10409049 atgcttgttggtggttatttggtttttgtgggtctcaaactatttgattttttctctctcttggttgtggtggaggttatgtttgctcgcaacataggtg 10408950  T
Q  230 gtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtact 329  Q
    ||||| || |||||| |||||||||||||| ||||||||||||||||||||||  |  ||||||||||||| ||||||||||||||| ||||||||| ||    
T  10408949 gtgatggaacggtcacgatggtggtgatggatcatatctaggttcgcttatgatatgttatggtttcgatgaatctttggttgtgttggtttgtggtgct 10408850  T
Q  330 tcatggtggttttcttggtggtactgattttggatc 365  Q
    |||||| ||||||  ||||||| || ||||||||||    
T  10408849 tcatggaggttttaatggtggtgctaattttggatc 10408814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 138 - 362
Target Start/End: Complemental strand, 5994846 - 5994622
Alignment:
Q  138 cggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattg 236  Q
    ||||| ||||||||||||||||||  ||||||| |||||||| | ||||||||||||||||| |||| ||||||| |||||||||||||| || | || |    
T  5994846 cggtgattgtttggttttcgtgggcctcaaactgtttgatttgttttctctcttggttgtggatggatgttatgtttgctcgcaacatag-tgctaatgg 5994748  T
Q  237 atcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggt 336  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||     
T  5994747 atcgatcatgatggtggtgatggatcatatctgggttcgcttatgaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatggc 5994648  T
Q  337 ggttttcttggtggtactgattttgg 362  Q
    ||| ||| ||||| |  |||||||||    
T  5994647 ggtattcatggtgatgttgattttgg 5994622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 183 - 362
Target Start/End: Complemental strand, 6444207 - 6444027
Alignment:
Q  183 ttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatg 281  Q
    ||||||||||||||||| |||||||||||| |||||||||| |||||||| || ||| |||||  | ||||||||||| ||| || |  |||||| ||||    
T  6444207 ttctctcttggttgtggatggaggttatgtttgctcgcaacttaggtggttatggattggtcacaaaggtggtgatggatcagatatgagttcgcctatg 6444108  T
Q  282 aacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 362  Q
    | ||  ||||||||||| | ||||||| ||||||| |||||||||||||| ||||||||||| ||||||  ||||||||||    
T  6444107 agctgttatggtttcgaagaatctttgattgtgttggtttgtggtacttcgtggtggttttcatggtggggctgattttgg 6444027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 501
Target Start/End: Complemental strand, 5994537 - 5994485
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5994537 tttttggtgagggttaatggtgatttttgtggtggttaatggtagttttggtg 5994485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 10408761 - 10408702
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||    
T  10408761 tgttgcttttaggtgagagttaatggtggtttttgtggtggtcaatggttgttttagtga 10408702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 15050162 - 15050214
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||| ||||||| |||||| || ||||||||||||| ||||||||||||||||    
T  15050162 tttttggtgaggattaatgatggtttttgtggtggttaatggtagttttggtg 15050214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 3763045 - 3763089
Alignment:
Q  454 ggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 498  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||    
T  3763045 ggtgaggattaatgatggtttttgtggtggttaatggtagttttg 3763089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 10409169 - 10409137
Alignment:
Q  9 ccactgtacctttccgacgtgcggttgctctct 41  Q
    |||||||| ||||||||||||||||||||||||    
T  10409169 ccactgtatctttccgacgtgcggttgctctct 10409137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 501
Target Start/End: Complemental strand, 25142954 - 25142902
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||| |||||||  || ||||||||||||||||||| |||||||||| |||||    
T  25142954 ttttcggtgaggagtagtggtgatttttgtggtggttaatggtagttgtggtg 25142902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 130 - 335
Target Start/End: Complemental strand, 34118198 - 34117991
Alignment:
Q  130 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtg--gtggaggttatgtctgctcgcaacatagg 227  Q
    ||||||| |||||||||||| |||||||||| | ||| | |||||||||| | |||||| |||||||||  || |||||||||| |||||||||||||||    
T  34118198 atgcttgccggtggttgtttagttttcgtggatctcagattatttgatttgttttctctattggttgtgtggtagaggttatgtttgctcgcaacatagg 34118099  T
Q  228 tggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggta 327  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||  |||||||||  ||||||||||||||||||  ||||||||     
T  34118098 tggtgatggatcggtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatggtttcagtggatctttggttgtgttgatttgtggtg 34117999  T
Q  328 cttcatgg 335  Q
    | ||||||    
T  34117998 cctcatgg 34117991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 39708920 - 39709029
Alignment:
Q  130 atgcttgtcggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtg 229  Q
    ||||||||||||||||||||||||||| ||||| || ||||||||||||  | ||||||||||||||||||||||||||||| ||||||||| |||||||    
T  39708920 atgcttgtcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcgcaatataggtg 39709018  T
Q  230 gtgattgatcg 240  Q
    ||||| |||||    
T  39709019 gtgatggatcg 39709029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 34655171 - 34655070
Alignment:
Q  138 cggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattga 237  Q
    ||||| ||||||||||||||||||| ||| |||||||||||| | |||||| |||||||||||||||||||||| |||||||||||||||||||||| ||    
T  34655171 cggtgtttgtttggttttcgtgggtctcagactatttgatttgttttctcttttggttgtggtggaggttatgtttgctcgcaacataggtggtgatgga 34655072  T
Q  238 tc 239  Q
    ||    
T  34655071 tc 34655070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 249 - 365
Target Start/End: Complemental strand, 34655083 - 34654967
Alignment:
Q  249 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 348  Q
    ||||||||||| ||||||||||||||||||||||| |  |||||||| |||| ||||||| ||||||| ||||||||| |||||||| ||||||| ||||    
T  34655083 ggtggtgatggatcatatctaggttcgcttatgaaatgttatggttttgatgcatctttgattgtgttggtttgtggtgcttcatggcggttttcatggt 34654984  T
Q  349 ggtactgattttggatc 365  Q
    ||| |||||||||||||    
T  34654983 ggtgctgattttggatc 34654967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 183 - 339
Target Start/End: Original strand, 11407935 - 11408092
Alignment:
Q  183 ttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatg 281  Q
    |||||||||||| |||| |||||||||||| ||||||||||||| |||||||| |||||| || || ||||||||||| ||| || | |||| |||||||    
T  11407935 ttctctcttggtggtgggtggaggttatgtttgctcgcaacataagtggtgatggatcggccacgaaggtggtgatggatcagatatgggttagcttatg 11408034  T
Q  282 aacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 339  Q
    |  |  |||||||||||   ||||||||||||||| ||||||||| ||||||||||||    
T  11408035 atatgttatggtttcgacaaatctttggttgtgttggtttgtggtgcttcatggtggt 11408092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 34654889 - 34654830
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34654889 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 34654830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 251 - 361
Target Start/End: Original strand, 26236671 - 26236781
Alignment:
Q  251 tggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtgg 350  Q
    ||||||||| ||| |||| ||||| ||||||| ||  ||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||| || |||    
T  26236671 tggtgatggatcagatctgggttcacttatgacctgttatgggttcgatggatctttggttgcgttggtttgtggtgcttcatggtggttttcatgatgg 26236770  T
Q  351 tactgattttg 361  Q
    | |||||||||    
T  26236771 tgctgattttg 26236781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 39709015 - 39709105
Alignment:
Q  249 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 339  Q
    ||||||||||| || ||||| |||||||||| |||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  39709015 ggtggtgatggatcgtatctgggttcgcttaggaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatggtggt 39709105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 615826 - 615753
Alignment:
Q  289 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 362  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||  ||||||| ||||||| |||| |||||    
T  615826 atggttttgatggatctttggttgtgttagtttgtggtgcttcatgacggttttcatggtggtgctgaatttgg 615753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 439 - 502
Target Start/End: Original strand, 39709180 - 39709243
Alignment:
Q  439 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  39709180 ctgatatttctttttggtgagggttaatggtgatttttgtggtggttaatggtagttttcgtga 39709243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 615891 - 615825
Alignment:
Q  168 actatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 234  Q
    |||||||||||  | |||||||||||||||||||||| |||||| || |||||||||||||||||||    
T  615891 actatttgattcgttttctctcttggttgtggtggagattatgtttgatcgcaacataggtggtgat 615825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 444 - 504
Target Start/End: Complemental strand, 34117955 - 34117896
Alignment:
Q  444 gttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 504  Q
    ||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  34117955 gttgctttt-ggtgagggttaatggtggtttttgtagcggtcaatggtagttttggtgatg 34117896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 496
Target Start/End: Complemental strand, 615691 - 615638
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttt 496  Q
    ||||||||||  |||| |||||||||||  |||||||| |||||||||||||||    
T  615691 tgttgctttttagtgatggttaatggtgccttttgtggcggtcaatggtagttt 615638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 11814744 - 11814695
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 498  Q
    |||| ||||||| ||||||||| |||||||| |||| |||||||||||||    
T  11814744 tttttggtgaggattaatggtggtttttgtgatggttaatggtagttttg 11814695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 497
Target Start/End: Original strand, 2077483 - 2077531
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 497  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| |||||||    
T  2077483 tttttggtgaggattaatggtggtttttgtggtggttaatgatagtttt 2077531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 14351174 - 14351226
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||| ||||||  ||||||||| ||||||||||||| | ||||||||||||||    
T  14351174 tttttggtgagaattaatggtggtttttgtggtggttagtggtagttttggtg 14351226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 39708650 - 39708690
Alignment:
Q  4 ccgccccactgtacctttccgacgtgcggttgctctctatc 44  Q
    |||| |||| ||||||||||||||| |||||||||||||||    
T  39708650 ccgcaccaccgtacctttccgacgtacggttgctctctatc 39708690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 139 - 362
Target Start/End: Complemental strand, 3302790 - 3302567
Alignment:
Q  139 ggtggttgtttggttttcgtgggtatcaaactatttgatttctcttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgat 238  Q
    |||||||||||||||||||||| | ||| |||||||||||  | | ||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  3302790 ggtggttgtttggttttcgtggatctcagactatttgattcatttcctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatagat 3302691  T
Q  239 cggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtgg 338  Q
    || ||| ||||||||||||   |||||||||| ||||||||| ||||  ||| |||||||||||||||||||||| || || |||||| |||||||   |    
T  3302690 cgatcacgatggtggtgatacatcatatctagattcgcttattaactgttatagtttcgatggatctttggttgtattggtatgtggtgcttcatgacag 3302591  T
Q  339 ttttcttggtggtactgattttgg 362  Q
    ||||| |||||||  |||||||||    
T  3302590 ttttcatggtggtgttgattttgg 3302567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 443 - 502
Target Start/End: Original strand, 11698554 - 11698613
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11698554 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 11698613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 3302486 - 3302427
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 502  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||    
T  3302486 tgttgctttttggtgagtgttaatggtggtttttgtggtggtcaatggtagttttggtga 3302427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 501
Target Start/End: Complemental strand, 31039052 - 31039000
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  31039052 ttttcggtgaggagtaatggtggtttttgtggtggttaatggtagttttggtg 31039000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 18269763 - 18269836
Alignment:
Q  289 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 362  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||  |||||||||    
T  18269763 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggtggttttcatggtggtgttgattttgg 18269836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 43275890 - 43275830
Alignment:
Q  443 tgttgcttttaggtgagggttaatggtgattttt-gtggtggtcaatggtagttttggtga 502  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  43275890 tgttgctttttggtgagggttaatggtggttttttgtggtggtcaatggtagttttggtga 43275830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 507
Target Start/End: Original strand, 18269919 - 18269971
Alignment:
Q  455 gtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 507  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  18269919 gtgatggttaatggtggtttttgtggtggtcaatggaagttttggtgacgatg 18269971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 31699270 - 31699221
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 498  Q
    |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  31699270 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 31699221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 18269713 - 18269764
Alignment:
Q  183 ttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 234  Q
    |||||||||| || || ||||||||||||||| ||| |||||||||||||||    
T  18269713 ttctctcttgattatgatggaggttatgtctgatcgaaacataggtggtgat 18269764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 43276045 - 43275999
Alignment:
Q  288 tatggtttcgatggatctttggttgtgttagtttgtggtacttcatg 334  Q
    |||| |||||||| ||||||||||||||| ||||||||| |||||||    
T  43276045 tatgatttcgatgaatctttggttgtgttggtttgtggtgcttcatg 43275999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 498
Target Start/End: Complemental strand, 31261 - 31218
Alignment:
Q  455 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 498  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  31261 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 31218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 501
Target Start/End: Complemental strand, 2989 - 2938
Alignment:
Q  449 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 501  Q
    |||| |||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  2989 tttttggtgaggagtaatggtgatttt-gtggtggttaatggtagttttggtg 2938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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