View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4013_high_19 (Length: 234)
Name: NF4013_high_19
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4013_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 44467604 - 44467772
Alignment:
| Q |
30 |
ttaaataaaaggttatatatgcatgcatgtttcagaatgagactaaacggagtggtaactgcgattacaaggtgaccataacaacaagctgcaaatctcc |
129 |
Q |
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| T |
44467604 |
ttaaataaaaggttatatatgc----atgtttcagaatgagactaaacggagtggtaactgcgattacaaggtgaccatagcaacaagctgcaaatctcc |
44467699 |
T |
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| Q |
130 |
tttatctacaaaagatgaaatcagtattttatttggagatgctgatggctctgaggttcctttctataccaca |
202 |
Q |
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| T |
44467700 |
tttatctacaaaagatgaaatcagtattttatttggagatgctgatggctctgaggttcctttctataccaca |
44467772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 44495320 - 44495420
Alignment:
| Q |
88 |
ctgcgattacaaggtgaccataacaacaagctgcaaatctcctttatctacaaaagatgaaatcagtattttatttggagatgctgatggctctgaggtt |
187 |
Q |
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| T |
44495320 |
ctgcaattacaaggtgatcatagaaacaagctgccgttctccacaatatacaacagatagaatcagtatttcatttggagatgctcatggctctgaggtt |
44495419 |
T |
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| Q |
188 |
c |
188 |
Q |
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| T |
44495420 |
c |
44495420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 44470788 - 44470876
Alignment:
| Q |
106 |
cataacaacaagctgcaaatctcctttatctacaaaagatgaaatcagtattttatttggagatgctgatggctctgaggttcctttct |
194 |
Q |
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| T |
44470788 |
cataacaacaagctgcagttctccaagacttacaacagatgcaatcgatattttaattggagatgctgatggcactcaggttcttttct |
44470876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 44489239 - 44489323
Alignment:
| Q |
104 |
accataacaacaagctgcaaatctcctttatctacaaaagatgaaatcagtattttatttggagatgctgatggctctgaggttc |
188 |
Q |
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| T |
44489239 |
accataaagacaagctgcaattctccagcatatacaacagatcaaatcagtcttttatttggagatgatcttggctctaaggttc |
44489323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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