View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4013_high_20 (Length: 228)
Name: NF4013_high_20
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4013_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 26421923 - 26421704
Alignment:
| Q |
1 |
attaagtaatttgttgttctctgtccctattccacaatatatcaagcagccaatattttccatgtgggtagatcctttataagagtgcatatttccacac |
100 |
Q |
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| T |
26421923 |
attaagtaatttgttgttctctgtccctattccacaatatatcaagcagccaatattttccatgtgggtagatcctttataagagtgcatatttccacac |
26421824 |
T |
|
| Q |
101 |
aaggaaactcgagcttataagatactggatcaattctttctatcacttgacaaggtccataaagtcgtgcagcaagcttatgat-----atcctaactac |
195 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26421823 |
aaggaaactcgagcttataagttactggatcaattctttctatcacttgacaaggtccataaagtcgtgcagcaagcttatgattgatcatcctaactac |
26421724 |
T |
|
| Q |
196 |
actttgctacctgtacatct |
215 |
Q |
| |
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|||||||||||||||||||| |
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| T |
26421723 |
actttgctacctgtacatct |
26421704 |
T |
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