View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4013_high_3 (Length: 476)

Name: NF4013_high_3
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4013_high_3
NF4013_high_3
[»] chr7 (3 HSPs)
chr7 (86-460)||(11471534-11471907)
chr7 (1-44)||(5233616-5233659)
chr7 (7-36)||(26993594-26993623)
[»] chr4 (2 HSPs)
chr4 (1-44)||(1074785-1074828)
chr4 (1-42)||(5775387-5775427)
[»] chr3 (1 HSPs)
chr3 (1-44)||(26290358-26290401)
[»] chr1 (3 HSPs)
chr1 (1-48)||(10572618-10572665)
chr1 (1-42)||(34298425-34298466)
chr1 (1-45)||(27471595-27471639)
[»] chr5 (1 HSPs)
chr5 (1-50)||(35017018-35017067)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 86 - 460
Target Start/End: Complemental strand, 11471907 - 11471534
Alignment:
Q  86 gagtcttgtaattgttatttggtgcattcttacttttactctcaatcattttcgagtgtttccataagatgcttctggagtattatgtatttcattgtcc 185  Q
    |||||||||||||||| ||| ||||||| |||||||  | |||||||||||| | ||||||||||||||||||||||||||||||||||||||||  |||    
T  11471907 gagtcttgtaattgttttttagtgcattattactttctcactcaatcattttagtgtgtttccataagatgcttctggagtattatgtatttcatactcc 11471808  T
Q  186 atttttgttttggtattttcctttactatcgtcattttcattagatccataagatctatcttcttttttagatgtcattaattaaattcaagaggtgata 285  Q
    ||  || |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  11471807 atagttattttggtattttcctttactat-gtcattttcattagatccataaaatctatcttcttttttacatgtcattaattaatttcaagaggtgata 11471709  T
Q  286 atctgaatgatgtatttaataatttgatccaattcatgatttgtctgattataacagctggggcatcctagttcttgataaaggggacaccatctcttat 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11471708 atctgaatgatgtatttaataatttgatccaattcatgatttgtctgattataacagctgggacatcctagttcttgataaaggggacaccatctcttat 11471609  T
Q  386 gattgacaaacaagtcaatagaattttcttggaccttatcttcatcattctaacataaaattttggttaagacat 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11471608 gattgacaaacaagtcaatagaattttcttggaccttatcttcatcattctaacataaaattttggttaagacat 11471534  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 5233659 - 5233616
Alignment:
Q  1 tatgtgattttctcaaattattaatggtatcagtgtgtcagtgt 44  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||    
T  5233659 tatgtgattttctcaaattattaaccgtatcggtgtgtcagtgt 5233616  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 26993594 - 26993623
Alignment:
Q  7 attttctcaaattattaatggtatcagtgt 36  Q
    ||||||||||||||||||||||||||||||    
T  26993594 attttctcaaattattaatggtatcagtgt 26993623  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1074828 - 1074785
Alignment:
Q  1 tatgtgattttctcaaattattaatggtatcagtgtgtcagtgt 44  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||    
T  1074828 tatgtgattttctcaaattattagtggtgtcagtgtgtccgtgt 1074785  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5775387 - 5775427
Alignment:
Q  1 tatgtgattttctcaaattattaatggtatcagtgtgtcagt 42  Q
    |||||||||||||||||||||||||||| || ||||||||||    
T  5775387 tatgtgattttctcaaattattaatggtgtc-gtgtgtcagt 5775427  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 26290401 - 26290358
Alignment:
Q  1 tatgtgattttctcaaattattaatggtatcagtgtgtcagtgt 44  Q
    |||||||||||||||||||||||||||| || | ||||||||||    
T  26290401 tatgtgattttctcaaattattaatggtgtcggcgtgtcagtgt 26290358  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10572618 - 10572665
Alignment:
Q  1 tatgtgattttctcaaattattaatggtatcagtgtgtcagtgttcat 48  Q
    ||||||||||||||||||||||| |||| || | ||||||||||||||    
T  10572618 tatgtgattttctcaaattattagtggtgtcggcgtgtcagtgttcat 10572665  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34298466 - 34298425
Alignment:
Q  1 tatgtgattttctcaaattattaatggtatcagtgtgtcagt 42  Q
    ||||||||||||||||||||||| |||| || ||||||||||    
T  34298466 tatgtgattttctcaaattattagtggtgtcggtgtgtcagt 34298425  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27471595 - 27471639
Alignment:
Q  1 tatgtgattttctcaaattattaatggtatcagtgtgtcagtgtt 45  Q
    |||||| ||||||||||||||||  |||||| |||||||||||||    
T  27471595 tatgtgcttttctcaaattattagcggtatcggtgtgtcagtgtt 27471639  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 35017067 - 35017018
Alignment:
Q  1 tatgtgattttctcaaattattaatggtatcagtgtgtcagtgttcatat 50  Q
    ||||||||||||||||||||||| |||| || | ||||| ||||||||||    
T  35017067 tatgtgattttctcaaattattagtggtttcggcgtgtcggtgttcatat 35017018  T

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