View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4013_high_6 (Length: 423)
Name: NF4013_high_6
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4013_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 407
Target Start/End: Complemental strand, 40624074 - 40623681
Alignment:
| Q |
14 |
atatgtgttgactgtaatttgcattttgttaactgaattaacccgttaacaagtgttttaataatcttgttaaggattgtgcttttacctcttcttatga |
113 |
Q |
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| T |
40624074 |
atatatgttgactgtaatttgcattttgttaactgaattaacccgttaacaagtgttttaataatcttgttaaggattgtgcttttacctcttcttatga |
40623975 |
T |
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| Q |
114 |
aggctaaattaagattctaaaaataataaaaagcaattagctagaatacttatgaagttagcatgaataataggaatacatgcacataatttagaagttt |
213 |
Q |
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| T |
40623974 |
aggctaaattaagattctaaaaataataaaaagcaattagctagaatacttatgaagttagcatgaataataggaatacatgcacataatttagaagttt |
40623875 |
T |
|
| Q |
214 |
aataggtacaataaacaaatgcattaattaagaggnnnnnnnnctcattagcacactaaagtgaaacacaaaaagcttatggataagaaaaaagaacctg |
313 |
Q |
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| T |
40623874 |
actaggtacaataaacaaatgcattaattaagaggaaaaaaaactcattagcacactaaagtgaaacacaaaaagcttatggataagaaaaaagaacctg |
40623775 |
T |
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| Q |
314 |
ctacattgctggcagaacctttgcttatgtccaccaattgtgacctgtgcagtcttggaatgaagttcacagaccttatgacgcctatgatagt |
407 |
Q |
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| T |
40623774 |
ctacattgctggcagaacctttgcttatgtccaccaattgtgacctgtgcagtcttggaatgaagttcacagaccttatgacgcctatgatagt |
40623681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 405
Target Start/End: Complemental strand, 27512125 - 27512047
Alignment:
| Q |
327 |
agaacctttgcttatgtccaccaattgtgacctgtgcagtcttggaatgaagttcacagaccttatgacgcctatgata |
405 |
Q |
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| T |
27512125 |
agaacctttgcttatgtccaccaagtgtcacctgtgaagtctttgaatgaagtttgcagaccttatggcgcatatgata |
27512047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 309 - 405
Target Start/End: Complemental strand, 45410729 - 45410633
Alignment:
| Q |
309 |
acctgctacattgctggcagaacctttgcttatgtccaccaattgtgacctgtgcagtcttggaatgaagttcacagaccttatgacgcctatgata |
405 |
Q |
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|||||||||| || |||||||||||||| ||| | |||| |||||| |||| || ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45410729 |
acctgctacactgttggcagaacctttgtttaaggccacaaattgtaacctctggagtcttggaatgaagttcacaaaccttatgacgcctatgata |
45410633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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