View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4013_low_10 (Length: 344)

Name: NF4013_low_10
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4013_low_10
NF4013_low_10
[»] chr8 (11 HSPs)
chr8 (12-328)||(2050199-2050515)
chr8 (14-136)||(2057164-2057286)
chr8 (15-173)||(2032961-2033120)
chr8 (20-146)||(10767605-10767731)
chr8 (237-328)||(2057403-2057494)
chr8 (39-173)||(2028449-2028583)
chr8 (39-148)||(1950435-1950544)
chr8 (18-150)||(2054211-2054346)
chr8 (12-124)||(2046390-2046505)
chr8 (12-124)||(2037013-2037128)
chr8 (27-64)||(2022290-2022327)
[»] chr4 (1 HSPs)
chr4 (60-150)||(48908694-48908784)
[»] chr2 (4 HSPs)
chr2 (33-124)||(28786134-28786225)
chr2 (27-86)||(28736617-28736676)
chr2 (27-144)||(28743185-28743302)
chr2 (27-86)||(28713343-28713402)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 328
Target Start/End: Original strand, 2050199 - 2050515
Alignment:
Q  12 atgaatagatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2050199 atgaatagatcctttgtttataatagtaattttgatatttatagctctccggcactcaattggagggatagttttgcgtgttacttggctcctgatactc 2050298  T
Q  112 ccaaaccagaagattttcccgcagtgtgcaggtatgtttcaatgcatgtgtataaaatttatcttatggcaccgacacttcaattaaaggagagtccggt 211  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2050299 ccaaaccagaagattttcccgcagtgtgcaggtatgtttcaaagcatgtgtataaaatttatcttatggcaccgacacttcaattaaaggtgagtccggt 2050398  T
Q  212 gtctgacatgttataattttttatactatattttcaaattattaatggcgttcacttatcattatcaatgccttcgctgctcgtgtatatgttagtgttt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  2050399 gtctgacatgttataattttttatactatattttcaaattattaatggcgttcacttatcattatcaattccttcgctactcgtgtatatgttagtgttt 2050498  T
Q  312 cataagacgtaagttaa 328  Q
    |||||||| ||||||||    
T  2050499 cataagacctaagttaa 2050515  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 2057164 - 2057286
Alignment:
Q  14 gaatagatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactccc 113  Q
    |||||||||||||||||| ||||| ||| ||||||||||||| ||||| ||||||||||||||||||||||||   |||||||||||||||||||||||     
T  2057164 gaatagatcctttgtttacaatagcaatgttgatatttatagctctccggcactcaattggagggatagttttagttgttacttggctcctgatactcca 2057263  T
Q  114 aaaccagaagattttcccgcagt 136  Q
    |||||||||||||||||||||||    
T  2057264 aaaccagaagattttcccgcagt 2057286  T

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Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 2032961 - 2033120
Alignment:
Q  15 aatagatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggct---cctgatactc 111  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||  |||||||||||||   ||||||||||    
T  2032961 aatagatcctttgtttataatagtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactc 2033060  T
Q  112 ccaaaccagaagattttcccgcagtgtgcaggtatgtttcaatgcatgtgtataaaatttat 173  Q
     ||||||| |||| ||||| |  || |||||||||||||  |||||| ||| ||||||||||    
T  2033061 tcaaaccacaagagtttcctgtggtatgcaggtatgttt--atgcatatgtgtaaaatttat 2033120  T

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Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 10767605 - 10767731
Alignment:
Q  20 atcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaacca 119  Q
    ||||||| |||| |||||||| |||||||||||||| || |||||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||||    
T  10767605 atcctttatttacaatagtaactttgatatttatagctcaccagcacttaattggagggatacttttacatgttacttggctcctgatactcccaaacca 10767704  T
Q  120 gaagattttcccgcagtgtgcaggtat 146  Q
    |||||| |||| | ||| |||||||||    
T  10767705 gaagatattcctgtagtatgcaggtat 10767731  T

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Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 2057403 - 2057494
Alignment:
Q  237 ctatattttcaaattattaatggcgttcacttatcattatcaatgccttcgctgctcgtgtatatgttagtgtttcataagacgtaagttaa 328  Q
    |||||||||||||| |||||||| || ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  2057403 ctatattttcaaatcattaatggtgtccacttgtcattatcaatgccttcggtgctcgtgtatatgttagtctttcataagacgtaagttaa 2057494  T

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Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 173
Target Start/End: Original strand, 2028449 - 2028583
Alignment:
Q  39 aattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaagattttcccgcagtgt 138  Q
    ||||||||| | ||||| || |||||||||||||||||||||| || | | |||| |||||||||||||||||||||||||||||||||||| |  || |    
T  2028449 aattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccagaagattttcctgttgtat 2028548  T
Q  139 gcaggtatgtttcaatgcatgtgtataaaatttat 173  Q
    ||||||||||||  |||||||  |||| |||||||    
T  2028549 gcaggtatgtttgtatgcatgcatatacaatttat 2028583  T

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Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 1950544 - 1950435
Alignment:
Q  39 aattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaagattttcccgcagtgt 138  Q
    ||||||||| | ||||| || |||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||| |||||||||| |  || |    
T  1950544 aattttgatttgtatagctcaccagcactcaattggagggatacttgtgcttgttacttggctcctgatactcccaaaccacaagattttcctgttgtat 1950445  T
Q  139 gcaggtatgt 148  Q
    ||||||||||    
T  1950444 gcaggtatgt 1950435  T

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Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 2054211 - 2054346
Alignment:
Q  18 agatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggct---cctgatactccca 114  Q
    ||||||||| |||| ||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||  ||| ||||||||   |||||||||| ||    
T  2054211 agatcctttatttacaatagcaatgttgatatttatagctctccagcactcaattggaaggatagttttggttgtaacttggctccacctgatactctca 2054310  T
Q  115 aaccagaagattttcccgcagtgtgcaggtatgttt 150  Q
    |||||||||| ||||| |  || |||||||||||||    
T  2054311 aaccagaagagtttcctgtggtatgcaggtatgttt 2054346  T

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Target: chr8; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 2046390 - 2046505
Alignment:
Q  12 atgaatagatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggct---cctgata 108  Q
    ||||||||||| ||| |||| ||||| |||| ||||||||||||  | ||||||||||||||||| |||| |||||| ||||||||||||   |||||||    
T  2046390 atgaatagatcttttatttacaatagcaattatgatatttatagcccaccagcactcaattggagagatacttttgcttgttacttggctccacctgata 2046489  T
Q  109 ctcccaaaccagaaga 124  Q
    ||| ||||||||||||    
T  2046490 ctctcaaaccagaaga 2046505  T

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Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 2037013 - 2037128
Alignment:
Q  12 atgaatagatcctttgtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggct---cctgata 108  Q
    ||||||||||| ||| |||| ||||| |||| ||||||||||||  | ||||||||||||||||| |||| |||||| ||||||||||||   |||||||    
T  2037013 atgaatagatcttttatttacaatagcaattatgatatttatagcccaccagcactcaattggagagatacttttgcttgttacttggctccacctgata 2037112  T
Q  109 ctcccaaaccagaaga 124  Q
    |||  |||||||||||    
T  2037113 ctcttaaaccagaaga 2037128  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 2022290 - 2022327
Alignment:
Q  27 gtttataatagtaattttgatatttatagttctccagc 64  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  2022290 gtttataatagtaattttgatctttatagttcaccagc 2022327  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 48908784 - 48908694
Alignment:
Q  60 ccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaagattttcccgcagtgtgcaggtatgttt 150  Q
    ||||| |||||||||||||||| ||||   |||| ||||||||||||||||||||||||||||||||||||   ||| |||||||||||||    
T  48908784 ccagcgctcaattggagggatacttttatttgtttcttggctcctgatactcccaaaccagaagattttcctctagtatgcaggtatgttt 48908694  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 28786225 - 28786134
Alignment:
Q  33 aatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaaga 124  Q
    ||||| |||||| || ||||||||||  ||||||||||||||||||||| ||||| ||||| |||||||||| || |||| |||||| ||||    
T  28786225 aatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcctaatgctcctaaaccacaaga 28786134  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 28736676 - 28736617
Alignment:
Q  27 gtttataatagtaattttgatatttatagttctccagcactcaattggagggatagtttt 86  Q
    ||||||||||||||||||||| | |||||||| |||||||| ||||||||||||| ||||    
T  28736676 gtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatactttt 28736617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 28743302 - 28743185
Alignment:
Q  27 gtttataatagtaattttgatatttatagttctccagcactcaattggagggatagttttgcgtgttacttggctcctgatactcccaaaccagaagatt 126  Q
    ||||||||||||||||||||| | |||||||| ||||| || ||||||||||||| ||| || |   |  |||||||| || |||| |||||||||||||    
T  28743302 gtttataatagtaattttgatttgtatagttcaccagcgcttaattggagggatactttggcattgaagatggctcctaatgctccaaaaccagaagatt 28743203  T
Q  127 ttcccgcagtgtgcaggt 144  Q
    | || | ||| |||||||    
T  28743202 tgccagtagtatgcaggt 28743185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 28713402 - 28713343
Alignment:
Q  27 gtttataatagtaattttgatatttatagttctccagcactcaattggagggatagtttt 86  Q
    ||||||||||| ||||||||| | ||||| || |||||||| ||||||||||||| ||||    
T  28713402 gtttataatagcaattttgatttgtatagatcaccagcacttaattggagggatactttt 28713343  T

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