View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4013_low_11 (Length: 339)
Name: NF4013_low_11
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4013_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 108 - 322
Target Start/End: Complemental strand, 42902740 - 42902526
Alignment:
| Q |
108 |
atataaataatgtgaatcttttaaatttactatgcatttttatgcgtgtgttcaaatcttaaatccattcaagtatttcttgtttacgttgttgttataa |
207 |
Q |
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| T |
42902740 |
atataaataatgtggatcttttaaatttgatatgcatttttatgcgtgtgttcaaatcttaaatccattcaagtatttcttgtttacgttgttgttataa |
42902641 |
T |
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| Q |
208 |
agtgtaagtaataccttattcgtagtgataatgacaatttgataataaagacctcaatattttctcccgtttacagtgattgacttatttgcactcgaaa |
307 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
42902640 |
agtgtacgtaataccttattcgtagtgataatgacaatttgataataaagacctcaatattttctccagtttacagtgattgacttatttgtactcgaaa |
42902541 |
T |
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| Q |
308 |
ccgtcactttttttt |
322 |
Q |
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||||||||||||||| |
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| T |
42902540 |
ccgtcactttttttt |
42902526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 42902857 - 42902761
Alignment:
| Q |
18 |
aagaatgtctacgtacaatgaccggggaagcaaatcttggattagggatgtgtccgtttcacgttttcagaataagatttgtgcacactcatataaat |
115 |
Q |
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|||||||||| |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42902857 |
aagaatgtctgcgtaca-tgaccgggggagcaaatcttggattagggatgtgtctgtttcacgttttcagaataagatttgtgcacactcataaaaat |
42902761 |
T |
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