View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4013_low_13 (Length: 294)
Name: NF4013_low_13
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4013_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 42077925 - 42077779
Alignment:
| Q |
147 |
ctttaagttgtaaccccatccatacattctggtacgacttatatattattagaataacataattttaatatatagatattagtctcgcacatgccatgta |
246 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42077925 |
ctttaagttgtaaccccatccatacattctggtacgacttatatattattagaataacataattttagtatatagatattagtctcgcacatgccatgta |
42077826 |
T |
|
| Q |
247 |
tcacttttagaagaaaagaataataaaccctctcaattctctatccc |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42077825 |
tcacttttagaagaaaagaataataaaccctctcaattctctatccc |
42077779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 42078115 - 42077967
Alignment:
| Q |
1 |
tatctgaattctctcataggtatatttccttccactagtttaaattacacgagcctttcccctccaattccattgcatcagttttgtcctttaactgcat |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42078115 |
tatctgaattctctcataggtatttttccttccactagtttaaattacacgagcctttcccctccaattccattgcatcagttttgtcccttaactgcac |
42078016 |
T |
|
| Q |
101 |
aagtgtgttatacgagccatttcatataatcccttgcatcaattttctt |
149 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42078015 |
aggtgtgttatacgagccatttcatataatcccttgcatcaattttctt |
42077967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 41943494 - 41943348
Alignment:
| Q |
147 |
ctttaagttgtaaccccatccatacattctggtacgacttatatattattagaataacataattttaatatatagatattagtctcgcacatgccatgta |
246 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41943494 |
ctttaagttgtaaccccatccatacattctggtacgacttatatattattagaataacataattttagtatatagatattagtctcgcacatgccatgta |
41943395 |
T |
|
| Q |
247 |
tcacttttagaagaaaagaataataaaccctctcaattctctatccc |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41943394 |
tcacttttagaagaaaagaataataaaccctctcaattctctatccc |
41943348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 10345113 - 10344967
Alignment:
| Q |
147 |
ctttaagttgtaaccccatccatacattctggtacgacttatatattattagaataacataattttaatatatagatattagtctcgcacatgccatgta |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10345113 |
ctttaagttgtaaccccatccatacattctggtactacttatatattattagaataacataattttagtatatagatattagtctcgcacatgccatgta |
10345014 |
T |
|
| Q |
247 |
tcacttttagaagaaaagaataataaaccctctcaattctctatccc |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10345013 |
tcacttttagaagaaaagaataataaaccctctcaattctctatccc |
10344967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 10345303 - 10345155
Alignment:
| Q |
1 |
tatctgaattctctcataggtatatttccttccactagtttaaattacacgagcctttcccctccaattccattgcatcagttttgtcctttaactgcat |
100 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10345303 |
tatctgaattttctcataggtatttttccttccactagtttaaattacacgagcctttccccttcaattccattgcatcagttttgtcctttaactgcac |
10345204 |
T |
|
| Q |
101 |
aagtgtgttatacgagccatttcatataatcccttgcatcaattttctt |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10345203 |
aagtgtgttatacgagccatttcatataatcccttgcatcaattttctt |
10345155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 41943684 - 41943536
Alignment:
| Q |
1 |
tatctgaattctctcataggtatatttccttccactagtttaaattacacgagcctttcccctccaattccattgcatcagttttgtcctttaactgcat |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
41943684 |
tatctgaattctctcataggtatttttccttccactagtttaaattacacgagcctttcccctccaattccattgcatcagttttgtcccttaactgcac |
41943585 |
T |
|
| Q |
101 |
aagtgtgttatacgagccatttcatataatcccttgcatcaattttctt |
149 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41943584 |
atgtgtgttatacgagccatttcatataatcccttgcatcaattttctt |
41943536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 15990659 - 15990513
Alignment:
| Q |
147 |
ctttaagttgtaaccccatccatacattctggtacgacttatatattattagaataacataattttaatatatagatattagtctcgcacatgccatgta |
246 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
15990659 |
ctttaggttgtaaccccatccctacattctggtacgacttatatattattagattaacataattttagtatatagatattagtctcacacatgccatgta |
15990560 |
T |
|
| Q |
247 |
tcacttttagaagaaaagaataataaaccctctcaattctctatccc |
293 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
15990559 |
tcacttttagaagaaaagaataattaaccctctcaattctctatccc |
15990513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 15990852 - 15990701
Alignment:
| Q |
1 |
tatctgaattctctcataggtatattt-ccttccactagtttaaattacacgagcctttcccctccaattccattgcatcagttttgtcctttaactgca |
99 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| |
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|
| T |
15990852 |
tatctgaattctctcataggtattttttccttccactagtttaaattacacgagcctttcccctccaattggattgcatcagttttgttccttaactgca |
15990753 |
T |
|
| Q |
100 |
taagtgtgttatacgagccatttcatat--aatcccttgcatcaattttctt |
149 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
15990752 |
caagtgtgttatacgagccatttcatataaaatcatttgcatcaattttctt |
15990701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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