View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4013_low_14 (Length: 283)

Name: NF4013_low_14
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4013_low_14
NF4013_low_14
[»] chr7 (1 HSPs)
chr7 (27-282)||(5798865-5799120)
[»] chr2 (4 HSPs)
chr2 (27-137)||(1731240-1731349)
chr2 (29-138)||(1575306-1575414)
chr2 (147-194)||(1731426-1731473)
chr2 (162-229)||(1575133-1575200)
[»] scaffold0265 (4 HSPs)
scaffold0265 (42-138)||(3866-3961)
scaffold0265 (42-138)||(8755-8850)
scaffold0265 (147-214)||(3709-3776)
scaffold0265 (147-214)||(8598-8665)
[»] chr1 (6 HSPs)
chr1 (42-138)||(21823960-21824055)
chr1 (27-138)||(21266403-21266513)
chr1 (42-138)||(21780246-21780340)
chr1 (147-194)||(21266280-21266327)
chr1 (147-214)||(21824145-21824212)
chr1 (148-214)||(21780087-21780153)
[»] chr5 (6 HSPs)
chr5 (42-137)||(20913257-20913351)
chr5 (42-138)||(20894500-20894592)
chr5 (42-138)||(20920608-20920703)
chr5 (147-214)||(20894341-20894408)
chr5 (147-214)||(20913444-20913511)
chr5 (147-210)||(20920793-20920856)
[»] chr4 (2 HSPs)
chr4 (42-137)||(43432066-43432160)
chr4 (147-210)||(43432253-43432316)
[»] chr6 (2 HSPs)
chr6 (42-137)||(17384908-17384997)
chr6 (157-235)||(17385027-17385105)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 27 - 282
Target Start/End: Complemental strand, 5799120 - 5798865
Alignment:
Q  27 caatttagttatggaaataatactcttaacttgtacctcaatttatgttgattgaataataataattaaggatgtagcgccttattataacttttgttat 126  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  5799120 caatttagtgatgagaataatactcttaacttgtacctcaatttatgttgattgaataataataattaagaatgtagcgccttattataacttttattat 5799021  T
Q  127 agtaaatcatcannnnnnnnatataaaaagttcctttcttagtgcaattttatttgttttatacaaaatgtgtttcctttaaaacagggtcaacctaata 226  Q
    ||||||||||||        |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  5799020 agtaaatcatcattttttttatattaaaagttcctttcttagtgcaattttatttgttttatacaaaatatgtttcctttaaaacagggccaacctaata 5798921  T
Q  227 gattaagaggtctaaagaaatgttttattgacgccttttaaaatatatatttttaa 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5798920 gattaagaggtctaaagaaatgttttattgacgccttttaaaatatatttttttaa 5798865  T

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Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 1731240 - 1731349
Alignment:
Q  27 caatttagttatggaaataatactcttaacttgtacctcaatttatgttgattgaataataataattaaggatgtagcgccttattataacttttgttat 126  Q
    ||||||| |||||  ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  1731240 caatttatttatgagaataatactcttaacttatacctcaatttatgttgattgaataataa-aaataaggatgtagcgccttattataacttttcttat 1731338  T
Q  127 agtaaatcatc 137  Q
    |||||||||||    
T  1731339 agtaaatcatc 1731349  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 1575414 - 1575306
Alignment:
Q  29 atttagttatggaaataatactcttaacttgtacctcaatttatgttgattgaataataataattaaggatgtagcgccttattataacttttgttatag 128  Q
    ||||||| |||  |||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||  ||||| || |     
T  1575414 atttagtgatgagaataatactcttaaattgtacctcaatttatgttgattgaacaataa-aaataaggatgtagcgcctttttatacattttgctagat 1575316  T
Q  129 taaatcatca 138  Q
    ||||||||||    
T  1575315 taaatcatca 1575306  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 1731426 - 1731473
Alignment:
Q  147 atataaaaagttcctttcttagtgcaattttatttgttttatacaaaa 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1731426 atataaaaagttcctttcttagtgcaattttatttgttttatacaaaa 1731473  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 1575200 - 1575133
Alignment:
Q  162 ttcttagtgcaattttatttgttttatacaaaatgtgtttcctttaaaacagggtcaacctaatagat 229  Q
    ||||||||||||||||| |||||||||||||||  |||| |||||||||||||| |  ||||||||||    
T  1575200 ttcttagtgcaattttagttgttttatacaaaagatgttgcctttaaaacagggccggcctaatagat 1575133  T

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Target: scaffold0265 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 3961 - 3866
Alignment:
Q  42 aataatactcttaacttgtacctcaatttatgttgattgaataataataattaaggatgtagcgccttattataacttttgttatagtaaatcatca 138  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||    
T  3961 aataataatcttaacttgtacctcaatttatgttgattgaataataa-aaataaggatgtagcgccttattataaattttgttatagtaaatcatca 3866  T

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Target: scaffold0265; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 8850 - 8755
Alignment:
Q  42 aataatactcttaacttgtacctcaatttatgttgattgaataataataattaaggatgtagcgccttattataacttttgttatagtaaatcatca 138  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||    
T  8850 aataataatcttaacttgtacctcaatttatgttgattgaataataa-aaataaggatgtagcgccttattataaattttgttatagtaaatcatca 8755  T

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Target: scaffold0265; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 3776 - 3709
Alignment:
Q  147 atataaaaagttcctttcttagtgcaattttatttgttttatacaaaatgtgtttcctttaaaacagg 214  Q
    |||||| ||||| | |||| |||||||||||||||||||||||||||| ||||| | |||||||||||    
T  3776 atataacaagtttcattctcagtgcaattttatttgttttatacaaaaggtgttacatttaaaacagg 3709  T

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Target: scaffold0265; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 8665 - 8598
Alignment:
Q  147 atataaaaagttcctttcttagtgcaattttatttgttttatacaaaatgtgtttcctttaaaacagg 214  Q
    |||||| ||||| | |||| |||||||||||||||||||||||||||| ||||| | |||||||||||    
T  8665 atataacaagtttcattctcagtgcaattttatttgttttatacaaaaggtgttacatttaaaacagg 8598  T

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Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 21823960 - 21824055
Alignment:
Q  42 aataatactcttaacttgtacctcaatttatgttgattgaataataataattaaggatgtagcgccttattataacttttgttatagtaaatcatca 138  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||    
T  21823960 aataataatcttaacttgtacctcaatttatgttgattgaataataa-aaataaggatgtagcgccttattataaattttgttatagtaaatcatca 21824055  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 21266513 - 21266403
Alignment:
Q  27 caatttagttatggaaataatactcttaacttgtacctcaatttatgttgattgaataataataattaaggatgtagcgccttattataacttttgttat 126  Q
    ||||||||| |||  ||||||||||||||||| ||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||||||| ||||    
T  21266513 caatttagtaatgagaataatactcttaacttttacctcaatttatgttgattgaatagtaa-aaataaggatgtagcaccttattataacttttcttat 21266415  T
Q  127 agtaaatcatca 138  Q
    ||||||||||||    
T  21266414 agtaaatcatca 21266403  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 21780340 - 21780246
Alignment:
Q  42 aataatactcttaacttgtacctcaatttatgttgattgaataataataattaaggatgtagcgccttattataacttttgttatagtaaatcatca 138  Q
    ||||||||||||||||||||||||||| |||||||||||||||  || || |||||||||||||||||||||||| |||||||||| ||||||||||    
T  21780340 aataatactcttaacttgtacctcaatatatgttgattgaata--aaaaaataaggatgtagcgccttattataaattttgttataataaatcatca 21780246  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 21266327 - 21266280
Alignment:
Q  147 atataaaaagttcctttcttagtgcaattttatttgttttatacaaaa 194  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  21266327 atataaaaagttcctttcttagtgcaattttatttgttttattcaaaa 21266280  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 21824145 - 21824212
Alignment:
Q  147 atataaaaagttcctttcttagtgcaattttatttgttttatacaaaatgtgtttcctttaaaacagg 214  Q
    |||||| ||||| | |||| |||||||||||||||||||||||||||| ||||| | |||||||||||    
T  21824145 atataacaagtttcattctcagtgcaattttatttgttttatacaaaaggtgttacatttaaaacagg 21824212  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 21780153 - 21780087
Alignment:
Q  148 tataaaaagttcctttcttagtgcaattttatttgttttatacaaaatgtgtttcctttaaaacagg 214  Q
    ||||| ||||| | |||| |||||||||||||||||||||||||||| ||||| || ||||||||||    
T  21780153 tataataagtttcattctcagtgcaattttatttgttttatacaaaaggtgttacccttaaaacagg 21780087  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 20913257 - 20913351
Alignment:
Q  42 aataatactcttaacttgtacctcaatttatgttgattgaataataataattaaggatgtagcgccttattataacttttgttatagtaaatcatc 137  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||  ||||||||||||||||||||    
T  20913257 aataataatcttaacttgtacctcaaattatgttgattgaataataa-aaataaggatgtagcgccttattatacattttgttatagtaaatcatc 20913351  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 20894592 - 20894500
Alignment:
Q  42 aataatactcttaacttgtacctcaatttatgttgattgaataataataattaaggatgtagcgccttattataacttttgttatagtaaatcatca 138  Q
    |||||||||||||||||||||||||||||||||||||||||||  || || |||||||||||||||  ||||||| |||||||||||||||||||||    
T  20894592 aataatactcttaacttgtacctcaatttatgttgattgaata--aaaaaataaggatgtagcgcc--attataaattttgttatagtaaatcatca 20894500  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 20920608 - 20920703
Alignment:
Q  42 aataatactcttaacttgtacctcaatttatgttgattgaataataataattaaggatgtagcgccttattataacttttgttatagtaaatcatca 138  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||| | |||| ||||||||||||||||    
T  20920608 aataataatcttaacttgtacatcaatttatgttgattgaataataa-aaataaggatatagcgccttattattaatttttttatagtaaatcatca 20920703  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 20894408 - 20894341
Alignment:
Q  147 atataaaaagttcctttcttagtgcaattttatttgttttatacaaaatgtgtttcctttaaaacagg 214  Q
    |||||| ||||| | |||| |||||||||||||||||||||||||||| ||||| |||||||||||||    
T  20894408 atataacaagtttcattctcagtgcaattttatttgttttatacaaaaggtgttacctttaaaacagg 20894341  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 20913444 - 20913511
Alignment:
Q  147 atataaaaagttcctttcttagtgcaattttatttgttttatacaaaatgtgtttcctttaaaacagg 214  Q
    |||||| ||||| | |||| |||||||||||||||||||||||||||| ||||| |||||||||||||    
T  20913444 atataacaagtttcattctcagtgcaattttatttgttttatacaaaaggtgttacctttaaaacagg 20913511  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 20920793 - 20920856
Alignment:
Q  147 atataaaaagttcctttcttagtgcaattttatttgttttatacaaaatgtgtttcctttaaaa 210  Q
    |||||| ||||| | |||| |||||||||||||||||||||| ||||| ||||| |||||||||    
T  20920793 atataacaagtttcattctcagtgcaattttatttgttttatgcaaaacgtgttacctttaaaa 20920856  T

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Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 43432066 - 43432160
Alignment:
Q  42 aataatactcttaacttgtacctcaatttatgttgattgaataataataattaaggatgtagcgccttattataacttttgttatagtaaatcatc 137  Q
    |||| |||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| |||| |||||||||||||||    
T  43432066 aatattactcttaacttatacctcaatttacgttgattgaataataaaaat-aaggatgtagcgccttattataaattttattatagtaaatcatc 43432160  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 43432253 - 43432316
Alignment:
Q  147 atataaaaagttcctttcttagtgcaattttatttgttttatacaaaatgtgtttcctttaaaa 210  Q
    |||||| ||||| | |||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  43432253 atataacaagtttcattcttagtgcaattttatttgtttgatacaaaaggtgttacctttaaaa 43432316  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 17384908 - 17384997
Alignment:
Q  42 aataatactcttaacttgtacctcaatttatgttgattgaataataataattaaggatgtagcgccttattataacttttgttatagtaaatcatc 137  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| || |||||| ||||   ||||||||||||||  || ||||||||||||    
T  17384908 aatattactcttaacttgtacctcaatttatgttgattgaataataa-aaataaggaagtag---cttattataacttt--ttttagtaaatcatc 17384997  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 17385027 - 17385105
Alignment:
Q  157 ttcctttcttagtgcaattttatttgttttatacaaaatgtgtttcctttaaaacagggtcaacctaatagattaagag 235  Q
    |||||||||||  |||||||  |||||||||||||||| |||| |||||||||||| ||||  ||||||| ||||||||    
T  17385027 ttcctttcttaaagcaatttattttgttttatacaaaaggtgtatcctttaaaacaaggtcggcctaatatattaagag 17385105  T

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