View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4013_low_15 (Length: 278)
Name: NF4013_low_15
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4013_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 2572069 - 2571933
Alignment:
| Q |
133 |
ttgatggatcctgtagttgttgttttaacttttaaggaattcaaaactaacaaatttatattttttatacaagtatttgtcgttttctccataattcctt |
232 |
Q |
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| T |
2572069 |
ttgatggatcctgtagttgttgttttaacttttaaggaattcaaaactaacaaatttatattttttatacaagtatttgtcgttttctccataattcctt |
2571970 |
T |
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| Q |
233 |
catattttcctgagtgcaataagtagttgagaataat |
269 |
Q |
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| T |
2571969 |
catattttcctgagtgcaataagtagttgagattaat |
2571933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 2572172 - 2572067
Alignment:
| Q |
1 |
aacgtcacatgtgtgtatattgttttacgtgctagttatgctttgtgactacaatgatttacttcctttttctatgaatatcaactttttattcagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572172 |
aacgtcacatgtgtgtatattgttttacgtgctagttatgctttgtgactacaatgatttacttcctttttctatgaatatcaactttttattcagaaaa |
2572073 |
T |
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| Q |
101 |
gtgttg |
106 |
Q |
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|||||| |
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| T |
2572072 |
gtgttg |
2572067 |
T |
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