View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4013_low_2 (Length: 607)
Name: NF4013_low_2
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4013_low_2 |
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| [»] scaffold0743 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 30380788 - 30381066
Alignment:
| Q |
19 |
taaaattgtactttaaatcaatcattctacttattcacatacatggtatcaaacgttttcacattcaagataaagaacatagataacatctttcacggtt |
118 |
Q |
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| T |
30380788 |
taaaattgtactttaaatcattcaat----tttttcacatacatggtatcaaacgttttcacattgaagagaaa-aacatagataacatcttttagggtt |
30380882 |
T |
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| Q |
119 |
tcttttatcacta--tcttttagtgtttcttacatcctcttaagatgcagtcctctccatcactaaaaaattatgggctaacttctcacaaccttttgta |
216 |
Q |
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| T |
30380883 |
tcttttatcattgagtcttttagtgtttttcacaccctctcaatttattgtcgtctccaccactaaaaaattatgggccaacttctcgcaaccttttgta |
30380982 |
T |
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| Q |
217 |
cgatcagagaaaaattagaataaaaatgaaacaaaatcggagcaataaaagaaggagatgattctaggaatcaaacgataacaa |
300 |
Q |
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| T |
30380983 |
cgatcagagaaaaattagaacacaaatgaaacacaattggagcaatcaaagaagaagatgattcttggaatcaaatgataacaa |
30381066 |
T |
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Target: scaffold0743 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 498 - 607
Target Start/End: Original strand, 3744 - 3853
Alignment:
| Q |
498 |
ttggcctatataaagctaacatcaacacctcacaaggtatctctcttctaacccgagcctcccttctatttacatactgacttgagcgttggagtgttgt |
597 |
Q |
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| T |
3744 |
ttggcctatataaagctaacagcaagacctcacaaggtatctctcttctaacccgagcctcccttctatttacatactgacttgagtgttggagtgttgt |
3843 |
T |
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| Q |
598 |
tataggtagc |
607 |
Q |
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| T |
3844 |
tataggtagc |
3853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 548
Target Start/End: Complemental strand, 10006533 - 10006482
Alignment:
| Q |
497 |
cttggcctatataaagctaacatcaacacctcacaaggtatctctcttctaa |
548 |
Q |
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| T |
10006533 |
cttggcctatataaggcgaacaccaagacctcacaaggtatctcttttctaa |
10006482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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