View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4013_low_23 (Length: 227)
Name: NF4013_low_23
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4013_low_23 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 62 - 227
Target Start/End: Original strand, 5798478 - 5798643
Alignment:
| Q |
62 |
caaattgaaatatgtatatataaagtaaaacttttcatattataactatttccctctcataaaaataaatgttgccaaagaaactagtgcgcttaaaaga |
161 |
Q |
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| T |
5798478 |
caaattgaaatatgtatatataaagtaaaacttttcatattataactatttccctctcataaaaataaatgttgccaaagaaactagtgcgcttaaaaaa |
5798577 |
T |
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| Q |
162 |
aagggaacacgttgatgttataaaataatagataaagtacttacttttaaagctaggtcgacccaa |
227 |
Q |
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| T |
5798578 |
aggggaacacgttgatgttataaaataatagataaagtacttacttttaaagctaggtcgacccaa |
5798643 |
T |
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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 17385503 - 17385396
Alignment:
| Q |
105 |
aactatttccctctcataaaaataaatgttgccaaagaaactagtgcgcttaaaagaaagggaacacgttgatgttataaaataatagataaagtactta |
204 |
Q |
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| T |
17385503 |
aactattgccctctcataaaaataattgtttccaaagaaactagtgcaactaaaa-aaaaggaacatgttgagggtataaaataatagataaagtattta |
17385405 |
T |
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| Q |
205 |
cttttaaag |
213 |
Q |
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| T |
17385404 |
cctttaaag |
17385396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 17385571 - 17385512
Alignment:
| Q |
66 |
ttgaaatatgtatatataaagtaaaacttttcatattataactattt-ccctctcataaa |
124 |
Q |
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| T |
17385571 |
ttgaaatatgtatatatcaaataaaacttttcatattataactatttgccctcttataaa |
17385512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 1731975 - 1731917
Alignment:
| Q |
66 |
ttgaaatatgtatatataaagtaaaacttttcatattataactatttccctctcataaa |
124 |
Q |
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| T |
1731975 |
ttgaaatatgtatatatcaaataaaacttttcatattataactattgccctctcataaa |
1731917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 1573622 - 1573676
Alignment:
| Q |
105 |
aactatttccctctcataaaaataaatgttgccaaagaaactagtgcgcttaaaa |
159 |
Q |
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| T |
1573622 |
aactattgtcctctcataaaaataattgttgttaaagaaactagtgcacttaaaa |
1573676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 21264458 - 21264558
Alignment:
| Q |
108 |
tatttccctctcataaaaataaatgttgccaaagaaactagtgcgcttaaaagaaagggaacacgtt-gatgttataaaataatagataaagtacttact |
206 |
Q |
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|||| |||||||||||||| || | |||||||||||| |||||| ||||||| ||| |||||| || |||||||||| ||||| ||||||||| ||||| |
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| T |
21264458 |
tattgccctctcataaaaaaaattattgccaaagaaattagtgcacttaaaaaaaa--gaacacattggatgttataatataatggataaagtatttact |
21264555 |
T |
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| Q |
207 |
ttt |
209 |
Q |
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||| |
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| T |
21264556 |
ttt |
21264558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 21264391 - 21264449
Alignment:
| Q |
66 |
ttgaaatatgtatatataaagtaaaacttttcatattataactatttccctctcataaa |
124 |
Q |
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||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||| |
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| T |
21264391 |
ttgaaatatgtttatatcagataaaacttttcatattataactatggccctctcataaa |
21264449 |
T |
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