View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4013_low_25 (Length: 210)
Name: NF4013_low_25
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4013_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 41 - 195
Target Start/End: Complemental strand, 10345511 - 10345357
Alignment:
| Q |
41 |
tttgcaattgtgacttggtcatttaaattaaaactacacattttcctcctaattattggcttagtggctgtacttgtgagaaataatggcaacattagga |
140 |
Q |
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| T |
10345511 |
tttgcaattgtgacttagtcatttaaattaaaactacacgttttcctcctaattattggcttagtggctgtacttgtgagaaataatggcaacattagga |
10345412 |
T |
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| Q |
141 |
agcatggaattagtcaaataattggtattgacgagatttctgctgctaccctatg |
195 |
Q |
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| T |
10345411 |
agcatggcattagtcaaataattggtattgtagagatttctgctgctaccttatg |
10345357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 41943858 - 41943761
Alignment:
| Q |
62 |
tttaaattaaaactacacattttcctcctaattatt-ggcttagtggctgtac-ttgtgagaaataatggcaacattaggaagcatggaattagtcaa |
157 |
Q |
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| T |
41943858 |
tttaaattaaaactacacgttttcctcctaattatttggcttagtggctgtacattgtgagaaataatggcaacattaggaagcatggaattagtcaa |
41943761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 42078309 - 42078192
Alignment:
| Q |
41 |
tttgcaattgtgacttggtcatttaaattaaaactacacattttcctcctaattatt-ggcttagtggctgtacttgtgagaaataatggcaacattagg |
139 |
Q |
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| T |
42078309 |
tttgcaattgtgacttggtcatttaaattaaaactacacgttttcctcctaattatttggcttagtagctgtacttgtgagaaataatggcaacattagg |
42078210 |
T |
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| Q |
140 |
aagcatggaattagtcaa |
157 |
Q |
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| T |
42078209 |
aagcatgaaattagtcaa |
42078192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 40842471 - 40842417
Alignment:
| Q |
85 |
cctcctaattatt-ggcttagtggctgtacttgtgagaaataatggcaacattag |
138 |
Q |
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| T |
40842471 |
cctcctaattatttggcttagtggctgcacttgagataaataatagcaacattag |
40842417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 9992490 - 9992544
Alignment:
| Q |
85 |
cctcctaattatt-ggcttagtggctgtacttgtgagaaataatggcaacattag |
138 |
Q |
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| T |
9992490 |
cctcctaattatttggcttagtggctgcacttgagagaaataatagcaacattag |
9992544 |
T |
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