View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4013_low_3 (Length: 515)
Name: NF4013_low_3
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4013_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 7 - 505
Target Start/End: Complemental strand, 35322864 - 35322366
Alignment:
| Q |
7 |
aaaaccagtgttgaagcttcatgcaatgccattgtatcttgtgctgatattctagcacttgcagcaagagatggtgtatttctggtgagtggtccattac |
106 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35322864 |
aaaactagtgttgaagcttcatgcaatgccactgtatcttgtgctgatattctagcacttgcagcaagagatggagtatttctggtgagtggtccattac |
35322765 |
T |
|
| Q |
107 |
tccattccaatttctttcttctgatgcaaaacatattagaaaaaattatactccgtctcgctgagagaaacatgagttacactttctcccatattaatag |
206 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
35322764 |
tccatgccaattactttcttctgatgcaaaacatattagaaaaaattatactccgtctagctgagagaaacttgagttacactttctcccatattaatag |
35322665 |
T |
|
| Q |
207 |
ttttattttttatttctagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatc |
306 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35322664 |
ttttattttttatttgtagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatc |
35322565 |
T |
|
| Q |
307 |
ccttcaccattttctgacctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacaccatag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35322564 |
ccttcaccattttctgacctttccactctcaccaaaatgtttacagacaagggtctaactgcaagtgacctcacagtactttctggtgcacacaccatag |
35322465 |
T |
|
| Q |
407 |
gccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctctctg |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
35322464 |
gccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaattaaattgtcctctttctg |
35322366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 7 - 505
Target Start/End: Complemental strand, 35307863 - 35307365
Alignment:
| Q |
7 |
aaaaccagtgttgaagcttcatgcaatgccattgtatcttgtgctgatattctagcacttgcagcaagagatggtgtatttctggtgagtggtccattac |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
35307863 |
aaaaccagtgttgaagcttcttgcaatgccactgtatcttgtgctgatattctagcacttgcagcaagagatggagtatttctggtgagtggtccattac |
35307764 |
T |
|
| Q |
107 |
tccattccaatttctttcttctgatgcaaaacatattagaaaaaattatactccgtctcgctgagagaaacatgagttacactttctcccatattaatag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
35307763 |
tccattccaatttctttcttctgatgcaaaacatattagaaaaaattatactccatctcgctgagagaaacttgagttacactttcacccatattaatag |
35307664 |
T |
|
| Q |
207 |
ttttattttttatttctagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatc |
306 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35307663 |
ttttattttttatttgtagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatc |
35307564 |
T |
|
| Q |
307 |
ccttcaccattttctgacctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacaccatag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35307563 |
ccttcaccattttctgacctttccactctcactacaatgttttcagccaagggtctaactgcaagtgacctcacagtactttctggtgcacacaccatag |
35307464 |
T |
|
| Q |
407 |
gccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctctctg |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35307463 |
gccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctttctg |
35307365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 223 - 505
Target Start/End: Complemental strand, 35280504 - 35280222
Alignment:
| Q |
223 |
tagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattttctg |
322 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||| |
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|
| T |
35280504 |
tagcttggaggtccttcatggatagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaacacccaaatcccttcaccagcttctg |
35280405 |
T |
|
| Q |
323 |
acctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagagtgcca |
422 |
Q |
| |
|
|||| ||||| ||||| ||||||||| | |||| ||| |||| ||| ||||| ||||| |||||||||||||||||||||||||||| ||| || || |
|
|
| T |
35280404 |
acctatccacactcactaaaatgtttcaaaacaaaggtctaacattaagagaccttacagtcctttctggtgcacacaccataggccaagcagaatgtca |
35280305 |
T |
|
| Q |
423 |
atttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctctctg |
505 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||||| |||| |
|
|
| T |
35280304 |
atttttccgaaatcgcatatacaatgaaaccaacatcgacacaaactttgcaaccttaagaaaagcaaactgtcctctttctg |
35280222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 218 - 488
Target Start/End: Complemental strand, 35311998 - 35311728
Alignment:
| Q |
218 |
atttctagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccatt |
317 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
35311998 |
atttgtagcttggaggaccctcatggacagtaccacttggaagaagagatgcaagaacagcaaatcaaagtgcagcaaatagccaaatccctagaccatc |
35311899 |
T |
|
| Q |
318 |
ttctgacctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagag |
417 |
Q |
| |
|
| | |||| ||| ||||| | ||||||| || ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35311898 |
ctttaacctaaccagactcactacaatgtttttagccaagggtctaactgcaagtgatctcacagtactttctggtgcacacaccataggccaaggagag |
35311799 |
T |
|
| Q |
418 |
tgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatc |
488 |
Q |
| |
|
|| | ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
35311798 |
tgtcgattgttcagaactcgcatatacaatgaaaccaacattgacacaaacttcgcaaccttaagaaaatc |
35311728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 223 - 498
Target Start/End: Complemental strand, 35289849 - 35289574
Alignment:
| Q |
223 |
tagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattttctg |
322 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||| |
|
|
| T |
35289849 |
tagcttggaggtccttcatgggtagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg |
35289750 |
T |
|
| Q |
323 |
acctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagagtgcca |
422 |
Q |
| |
|
|||| ||||| ||||| | ||||||| | |||| ||| |||| || |||||| || || ||||||||||||||||||||||| |||| ||| || || |
|
|
| T |
35289749 |
acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttactgtcctttctggtgcacacaccataggtcaagcagaatgtca |
35289650 |
T |
|
| Q |
423 |
atttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcct |
498 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35289649 |
atttttcagaactcgtatatacaacgaaaccaacattgacacaaactttgcaaccttaagaaaatcaaattgtcct |
35289574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 223 - 482
Target Start/End: Complemental strand, 35275737 - 35275478
Alignment:
| Q |
223 |
tagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattttctg |
322 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
35275737 |
tagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaatccctggaccatcttctg |
35275638 |
T |
|
| Q |
323 |
acctttccactctcaccaaaatgtttacagacaagggtttaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagagtgcca |
422 |
Q |
| |
|
|||| || || ||||| | ||||||| | |||| || |||| || |||||| ||||| || |||||||||||||||||||| ||| ||||| || |
|
|
| T |
35275637 |
acctatcgacactcactagaatgtttcaaaacaaaagtctaacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtca |
35275538 |
T |
|
| Q |
423 |
atttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaag |
482 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||| |||||| || |||||||| |
|
|
| T |
35275537 |
atttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaag |
35275478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 35312651 - 35312554
Alignment:
| Q |
7 |
aaaaccagtgttgaagcttcatgcaatgccattgtatcttgtgctgatattctagcacttgcagcaagagatggtgtatttctggtgagtggtccatt |
104 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||| |
|
|
| T |
35312651 |
aaaaacagtgttgaagcttcatgcaatgccactgtctcttgtgccgatattctagcacttgcagcaagagatggagtagttctggtgagtgatccatt |
35312554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 35281896 - 35281823
Alignment:
| Q |
7 |
aaaaccagtgttgaagcttcatgcaatgccattgtatcttgtgctgatattctagcacttgcagcaagagatgg |
80 |
Q |
| |
|
||||| |||||||||||| | |||| ||||| ||| ||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
35281896 |
aaaactagtgttgaagctgcttgcagtgccactgtctcttgtgctgatattcttgcacttgcaactagagatgg |
35281823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 35290741 - 35290668
Alignment:
| Q |
7 |
aaaaccagtgttgaagcttcatgcaatgccattgtatcttgtgctgatattctagcacttgcagcaagagatgg |
80 |
Q |
| |
|
||||| |||||||||||| | |||| ||||| ||| ||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
35290741 |
aaaactagtgttgaagctgcttgcagtgccactgtctcttgtgctgatattcttgcacttgcaactagagatgg |
35290668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 35275986 - 35275913
Alignment:
| Q |
7 |
aaaaccagtgttgaagcttcatgcaatgccattgtatcttgtgctgatattctagcacttgcagcaagagatgg |
80 |
Q |
| |
|
||||||||||||||| || | ||||| |||| || ||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
35275986 |
aaaaccagtgttgaaactgcttgcaaagccaccgtctcttgtgctgatattcttgcacttgcaactagagatgg |
35275913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 36190635 - 36190689
Alignment:
| Q |
224 |
agcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagc |
278 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
36190635 |
agcttggaggcccaacatgggatgtgaaacttggaagaagagatgcaagaacagc |
36190689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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