View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4013_low_6 (Length: 435)

Name: NF4013_low_6
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4013_low_6
NF4013_low_6
[»] chr1 (1 HSPs)
chr1 (13-435)||(6737803-6738225)


Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 13 - 435
Target Start/End: Complemental strand, 6738225 - 6737803
Alignment:
Q  13 aatattacagcctctataatgacaccaaaatctttgtgaaataactaaaatacaaaagctaacataattaaaattgcatctgaattttatttgacatttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6738225 aatattacagcctctataatgacaccaaaatctttgtgaaataactaaaatacaaaagctaacataattaaaattgcatctgaattttatttgacatttt 6738126  T
Q  113 acttatttcattgtttccttagtccacaaattgaacaacaaactttctcaagtcttgtactcctattctcataaggaagattgagatgaaagcttgaaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6738125 acttatttcattgtttccttagtccacaaattgaacaacaaactttctcaagtcttgtactcctattctcataaggaagattgagatgaaagcttgaaat 6738026  T
Q  213 tcagtcagtcagcagcaatcttcccatcatgtaaaagagatgctaatgaaataaactatcctccaccagttcacactagactgaagcatcaaatagaagt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6738025 tcagtcagtcagcagcaatcttcccatcatgtaaaagagatgctaatgaaataaactatcctccaccagttcacactagactgaagcatcaaatagaagt 6737926  T
Q  313 tacataactactcaagataaatgcttttccaagtctgaaacagttttgaaagatttgtgacatatcataacattactgcactgaggaaactctcttgaac 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6737925 tacataactactcaagataaatgcttttccaagtctgaaacagttttgaaagatttgtgacatatcataacattactgcactgaggaaactctcttgaac 6737826  T
Q  413 acactcttcctatcaagtttcac 435  Q
    |||||||||||||||||||||||    
T  6737825 acactcttcctatcaagtttcac 6737803  T

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