View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4013_low_9 (Length: 368)
Name: NF4013_low_9
Description: NF4013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4013_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 7548197 - 7548334
Alignment:
| Q |
17 |
taaaaaaccaaccaacaattagacaaacttgtcatagctcactattttttaatcaaatctttgcaacttcaatcaaaattcaccacaacaaaaatatttc |
116 |
Q |
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| T |
7548197 |
taaaaaaccaaccaacaattagacaaacttgtcatagctcactattttttaatcaaatctttgcaacttcaatcaaaattcaccacaacaaaaatatttc |
7548296 |
T |
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| Q |
117 |
tttaaactcaatcaacaataatgcaaacgtcgagatct |
154 |
Q |
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| T |
7548297 |
tttaaactcaatcaacagtaatgcaaacgtcgagatct |
7548334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 7548482 - 7548627
Alignment:
| Q |
214 |
tgtaagattttaaaaacataatgaacttttataatccgacttccatgactgtcaactccaaacaaagtcacaaggtgtgaacttttaaaaccaagaattt |
313 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7548482 |
tgtaagattttaaaaacataatgaacttttgcaatccgacttctatgactgtcaactccaaacaaagtcacaaggtgtgaacttttaaaaccaagaattt |
7548581 |
T |
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| Q |
314 |
aggtgaaacattgtagctgccatgggcagaaagtttcaagtataat |
359 |
Q |
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| T |
7548582 |
aggtgaaacattgtagctgccatgggcagaaagtttcaagtataat |
7548627 |
T |
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