View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_high_1 (Length: 701)

Name: NF4014_high_1
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_high_1
NF4014_high_1
[»] chr4 (1 HSPs)
chr4 (1-641)||(26010947-26011590)


Alignment Details
Target: chr4 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 641
Target Start/End: Complemental strand, 26011590 - 26010947
Alignment:
Q  1 aatgcaaaaggaaatagcattcggaagatagatttttatagagttgcacttgaaagtgtgctaatgatgaaacgatagtcccaataattttaaaaggtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26011590 aatgcaaaaggaaatagcattcggaagatagatttttatagagttgcacttgaaagtgtgctaatgatgaaacgatagtcccaataattttaaaaggtgt 26011491  T
Q  101 gtgatggattcttgttcagatagtaacaaattctaagctaaaccaaatgataaaaaa-ctaaggaaagaaaagaaagataacaaatggctgatttcataa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26011490 gtgatggattcttgttcagatagtaacaaattctaagctaaaccaaatgataaaaaaactaaggaaagaaaagaaagataacaaatggctgatttcataa 26011391  T
Q  200 ctctggagatgttagcacacctctataagtaactagggctgatgcctagacctaatacaaattgggcctgggcctctattataaacattgctatgataaa 299  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  26011390 ctctagagatgttagcacacctctataagtaactagggctgatgcctagacctaatacaaattgggcttgggcctctattacaaacattgctatgataaa 26011291  T
Q  300 ataaagatttaacccccc--tgatttacttaaggacatagtttttagttcaaagtggcttagtaacaattcttttagccctttcagtaccaaaaactcta 397  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26011290 ataaagatttaacccccccctgatttacttaaggacatagtttttagtccaaagtggcttagtaacaattcttttagcccgttcagtaccaaaaactcta 26011191  T
Q  398 tcagtgtgggtgacttctgattgaactcgtgatgtgtgagacaaacaacaagaaatacatcatttcgtgaaataaatgtgagtgttaaacattttgagtc 497  Q
    |||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26011190 tcagtgtgagtgacttctgattgaactcgtgatgtgtgaaacaaaaaacaagaaatacatcatttcgtgaaataaatgtgagtgttatacattttgagtc 26011091  T
Q  498 atctatcgacacaaattttggttatttgtcaaactaccaaaacttcggtggcatctattattggcaaaatttgaaatttgtcaaagagaaccaaagtcaa 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26011090 atctatcgacacaaattttggttatttgtcaaactaccaaaacttcggtggcatctattattggcaaaatttgaaatttgtcaaagagaaccaaagtcaa 26010991  T
Q  598 cacaaattcaacattcctataaccatttaataattaataactca 641  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  26010990 cacaaattcaacattcctataaccatttaacaattaataactca 26010947  T

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