View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_high_17 (Length: 417)

Name: NF4014_high_17
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_high_17
NF4014_high_17
[»] chr8 (1 HSPs)
chr8 (219-408)||(41374334-41374527)
[»] chr5 (2 HSPs)
chr5 (75-221)||(33432928-33433072)
chr5 (120-220)||(33433812-33433910)
[»] chr3 (2 HSPs)
chr3 (75-221)||(19251707-19251851)
chr3 (120-220)||(19252590-19252688)
[»] chr7 (1 HSPs)
chr7 (147-221)||(25442213-25442285)
[»] chr4 (1 HSPs)
chr4 (97-195)||(12826129-12826227)
[»] chr6 (1 HSPs)
chr6 (139-195)||(34991999-34992055)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 219 - 408
Target Start/End: Complemental strand, 41374527 - 41374334
Alignment:
Q  219 tgagtaaatgagaataaacaagccatttagcagtgaccacatcaatagttcatgaaaccagcaaaaagccaaaaactaataaagaacaatcatacagaga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41374527 tgagtaaatgagaataaacaagccatttagcagtgaccacatcaatagttcatgaaaccagcaaaaagccaaaaactaataaagaacaatcatacagaga 41374428  T
Q  319 atcaaaaataaatactagttcctgaaacaaaactggaatctaatgccaaatactcgtaccggcccc----taaaacttataataacctttcatc 408  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |||||    
T  41374427 atcaaaaataaatacgagttcctgaaacaaaactggaatctaatgccaaatactcgtaccggcccctaattaaaacttataataacctctcatc 41374334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 33433072 - 33432928
Alignment:
Q  75 gaagatggaacatgtgtattgctgtatcaaagaatacctattttaaaccatttaatcctaacccttgaattaatttttgccacgtgttactcatctatgt 174  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||| | |||||||||| ||||||||||||||| |||||||||||     
T  33433072 gaagatggaacatgtgtattggtgtatcaaagaatgtctattttaaaccatttaatcccagcccttgaatttatttttgccacgtgtcactcatctatgc 33432973  T
Q  175 actgaagaggggtaaatggagcaagtgtgtaaatggagcaaagatga 221  Q
    |||||  |||||||||||||||||  |||||||||||||||||||||    
T  33432972 actgagcaggggtaaatggagcaa--gtgtaaatggagcaaagatga 33432928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 33433812 - 33433910
Alignment:
Q  120 aaccatttaatcctaacccttgaattaatttttgccacgtgttactcatctatgtactgaagaggggtaaatggagcaagtgtgtaaatggagcaaagat 219  Q
    ||||||||||||  | |||||||||| |||| || ||||||| |||||| |||| |||||| ||||||||||||||||   | |||||||||||||||||    
T  33433812 aaccatttaatcacagcccttgaatttatttctgtcacgtgtcactcatatatgcactgaataggggtaaatggagca--ggcgtaaatggagcaaagat 33433909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 19251851 - 19251707
Alignment:
Q  75 gaagatggaacatgtgtattgctgtatcaaagaatacctattttaaaccatttaatcctaacccttgaattaatttttgccacgtgttactcatctatgt 174  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||| |  ||| ||||| ||||||||||||||| |||||||||||     
T  19251851 gaagatggaacatgtgtattgttgtatcaaagaatgtctattttaaaccatttaatcccaggcctggaatttatttttgccacgtgtcactcatctatgc 19251752  T
Q  175 actgaagaggggtaaatggagcaagtgtgtaaatggagcaaagatga 221  Q
    |||||| |||||||||||||||||  |||||||||||| ||||||||    
T  19251751 actgaacaggggtaaatggagcaa--gtgtaaatggagtaaagatga 19251707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 19252590 - 19252688
Alignment:
Q  120 aaccatttaatcctaacccttgaattaatttttgccacgtgttactcatctatgtactgaagaggggtaaatggagcaagtgtgtaaatggagcaaagat 219  Q
    ||||||||||||  |||||||||||| |||| || ||||||| |||||| |||| |||||| ||||||||||||||||   | |||||||||||||||||    
T  19252590 aaccatttaatcacaacccttgaatttatttctgtcacgtgtcactcatatatgcactgaacaggggtaaatggagca--ggcgtaaatggagcaaagat 19252687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 25442213 - 25442285
Alignment:
Q  147 atttttgccacgtgttactcatctatgtactgaagaggggtaaatggagcaagtgtgtaaatggagcaaagatga 221  Q
    ||||||||||| ||| ||||||||||   ||||| |||||||||||||||||  |||||||||||||| ||||||    
T  25442213 atttttgccacatgtcactcatctataccctgaacaggggtaaatggagcaa--gtgtaaatggagcatagatga 25442285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 12826227 - 12826129
Alignment:
Q  97 tgtatcaaagaatacctattttaaaccatttaatcctaacccttgaattaatttttgccacgtgttactcatctatgtactgaagaggggtaaatggag 195  Q
    ||||||| | ||| |||||||||||||||| ||||| |||| || | ||   ||||||||| ||| ||||||||| | | |||| ||||||||||||||    
T  12826227 tgtatcacaaaatgcctattttaaaccattcaatccaaaccgttaatttttgttttgccacatgtcactcatctaggcattgaacaggggtaaatggag 12826129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 34991999 - 34992055
Alignment:
Q  139 ttgaattaatttttgccacgtgttactcatctatgtactgaagaggggtaaatggag 195  Q
    |||||||  |||||||||| ||| ||||||||||| | |||| ||||||||||||||    
T  34991999 ttgaattgttttttgccacatgtcactcatctatgcattgaacaggggtaaatggag 34992055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University