View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_high_22 (Length: 356)
Name: NF4014_high_22
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 30903544 - 30903216
Alignment:
| Q |
14 |
agaaataaaaagttgtaagtaaagatgtactatagttggnnnnnnnntgt-ccaagtggtagacaaga---gaagatattacaagtttgtttttgaccaa |
109 |
Q |
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| T |
30903544 |
agaaataaaaaattgtaagtaaagatgtactatagttggaaaaaaaaaattccaagccgtagacaagataagaagatagtacaagtttgtttttgaccaa |
30903445 |
T |
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| Q |
110 |
gccccgccattcatctaaaagatatactatatcaagcctattctagaatcattttggacgctcaacaaacaattcatcagattataatcatctctattta |
209 |
Q |
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| T |
30903444 |
gcgccgccattcatctagaagatatactatatgaagcctattctagaatcattttggacactcaacaaacaattcatcagattatagtcatctctattta |
30903345 |
T |
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| Q |
210 |
tgctttcattttaagagagataatat------nnnnnnntaatgtttaatgcattatctactttatatgtatttctctcatcaaataaaatatttaattt |
303 |
Q |
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| T |
30903344 |
tgctttcattttaagagagataatataaaaaaaaataaaaaatgtttaacgcattatctactttatatgtatttctctcatcaaataaaatatttaattt |
30903245 |
T |
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| Q |
304 |
atttaggttttattttagagtttggatga |
332 |
Q |
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| T |
30903244 |
atttaggttttatttgagagtttagatga |
30903216 |
T |
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