View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_high_27 (Length: 333)
Name: NF4014_high_27
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 2489369 - 2489684
Alignment:
| Q |
1 |
aagaagatgagtgcaaagacatgtggtgttgagtcgagaacaatgaccatttcaccaggcttggagaagtttctaatttaaaatcaaaatgaatgaaata |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2489369 |
aagaagatgagtgcaaagacaagtggtgttgagtcgagaacaatgaccatttcaccaggcttcgagaagtttctaatttaaaatcaaaatgaatgaaata |
2489468 |
T |
|
| Q |
101 |
gatatttagagattctaagcacataaaggcagattgtgagtaagaaaccaaagtataattgacacaaggttgatgttaaaatcaggtaagaatagaacat |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2489469 |
gatatttagagattcgaagcacataaaggcagattgtgagtaagaaaccaaagtataattgaaacaaggttgatgttaaaatcaggtaagaatagaacat |
2489568 |
T |
|
| Q |
201 |
ccatacagtttagatcatctgaagtagtaaattttcattcaagttctgccagaactttataaccatttggacgtaagcaccatttggtaagctaattcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489569 |
ccatacagtttagatcatctgaagtagtaaattttcattcaagttctgccagaactttataaccatttggacgtaagcaccatttggtaagctaattcaa |
2489668 |
T |
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| Q |
301 |
tgttgcaccaatacga |
316 |
Q |
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|||||||||||||||| |
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| T |
2489669 |
tgttgcaccaatacga |
2489684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 5034505 - 5034609
Alignment:
| Q |
1 |
aagaagatgagtgcaaagacatgtggtgttgagtcgagaacaatgaccatttcaccaggcttggagaagtttctaatttaaaatcaaaatgaatgaaata |
100 |
Q |
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||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||| ||||||||||||||||||||| | ||||| |||||||||||| |
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| T |
5034505 |
aagaagatgagtgcaaagacatgaagtgttaagtcatgaacaatgactatttcaccatgcttggagaagtttctaatttcacatcaatatgaatgaaata |
5034604 |
T |
|
| Q |
101 |
gatat |
105 |
Q |
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||||| |
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| T |
5034605 |
gatat |
5034609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 2532882 - 2532957
Alignment:
| Q |
161 |
gacacaaggttgatgttaaaatcaggtaagaatagaacatccatacagtttagatcatctgaagtagtaaattttc |
236 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| |
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| T |
2532882 |
gacacaaggttaatattaaaatcaggtaagaatagaacatccataagttttagatcatctaaagtagtaacttttc |
2532957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 5034688 - 5034823
Alignment:
| Q |
112 |
attctaagcacataaaggcagattgtgagtaagaaaccaaagtataattgacacaaggttgatgttaaaatcaggtaagaatagaacatccatacagttt |
211 |
Q |
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|||||||||||||||||| |||||| ||||| |||| || | || | |||||||| ||||| |||||||| ||||||||| ||||||| || |
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| T |
5034688 |
attctaagcacataaaggaagattg--agtaacaaacgaacatctactagacacaagtttgataataaaatcaagtaagaatataacatcc-------tt |
5034778 |
T |
|
| Q |
212 |
agatcatctgaagtagtaaattttcattcaagttctgccagaact |
256 |
Q |
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||||||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
5034779 |
agatcatctgaagtagtaaattttccttccagttctgccaaaact |
5034823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 2517579 - 2517652
Alignment:
| Q |
165 |
caaggttgatgttaaaatcaggtaagaatagaacatccata--cagtttagatcatctgaagtagtaaattttc |
236 |
Q |
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| T |
2517579 |
caaggttgatattaaaatcaggtaagaatagaacatccataattggtttagatcctctaaagtagtaacttttc |
2517652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 2498454 - 2498527
Alignment:
| Q |
150 |
aaagtataattgacacaaggttgatgttaaaatcaggtaagaatagaacatccatacagtttagatcatctgaa |
223 |
Q |
| |
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|||| ||||| | |||||||||||| ||||||||||||||||||||||||||| || ||||||| | |||||| |
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| T |
2498454 |
aaaggataataggcacaaggttgatattaaaatcaggtaagaatagaacatccttaaggtttagaccgtctgaa |
2498527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 2627016 - 2626931
Alignment:
| Q |
112 |
attctaagcacataaaggcagattgtgagtaagaaaccaaagtataattgacacaaggttgatgttaaaatcaggtaagaatagaa |
197 |
Q |
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||||||| |||||||||||||| | ||||||||| | |||| |||| |||| ||||||||| | |||||||| ||||||||||| |
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| T |
2627016 |
attctaaacacataaaggcagaatccgagtaagaagctcaagtctaatagacataaggttgatatcaaaatcagttaagaatagaa |
2626931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 2524425 - 2524505
Alignment:
| Q |
1 |
aagaagatgagtgcaaagacatgtggtgttgagtcgagaacaatgaccatttcaccaggcttggagaagtttctaatttaa |
81 |
Q |
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||||||||||||||||||| ||| |||||||||| | ||||||| | |||| || | |||| ||||||||||||| |||| |
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| T |
2524425 |
aagaagatgagtgcaaagaaatgaagtgttgagtcaataacaatgtcaatttaactatgcttagagaagtttctaaattaa |
2524505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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