View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_high_28 (Length: 328)

Name: NF4014_high_28
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_high_28
NF4014_high_28
[»] chr7 (2 HSPs)
chr7 (18-318)||(4799750-4800050)
chr7 (20-51)||(4800047-4800078)
[»] chr1 (9 HSPs)
chr1 (20-318)||(23833370-23833668)
chr1 (171-251)||(13479537-13479618)
chr1 (20-63)||(13602548-13602591)
chr1 (72-125)||(19072540-19072593)
chr1 (72-125)||(19120430-19120483)
chr1 (72-147)||(51796316-51796391)
chr1 (265-307)||(13484099-13484141)
chr1 (265-303)||(16756823-16756861)
chr1 (265-307)||(19154810-19154852)
[»] scaffold0006 (3 HSPs)
scaffold0006 (101-251)||(128474-128625)
scaffold0006 (72-251)||(214854-215043)
scaffold0006 (20-63)||(131205-131248)
[»] chr2 (2 HSPs)
chr2 (72-138)||(4532924-4532990)
chr2 (148-205)||(45640839-45640896)
[»] chr5 (1 HSPs)
chr5 (72-149)||(7649290-7649367)
[»] chr6 (1 HSPs)
chr6 (72-123)||(21801778-21801829)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 4800050 - 4799750
Alignment:
Q  18 agtaggttcccttgctcaacacaaccttcaagtattcactctctgtttccctcgttttgatgtttgggaaaatggaggggatgttaggtgcatttagata 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4800050 agtaggtttccttgctcaacacaaccttcaagtattcactctctgtttccctcgttttgatgtttgggaaaatggaggggatgttaggtgcatttagata 4799951  T
Q  118 gaactcaagggaggttgttatatttttccctatttataatgaaaactgtacactaagaatcccttaattgaggaaataaatctagactnnnnnnntccta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       |||||    
T  4799950 gaactcaagggaggttgttatatttttccctatttataatgaaaactgtacactaagaatcccttaattgaggaaataaatctagaataaaaaaatccta 4799851  T
Q  218 catcaatcctaataaaaacatgatcatatacaagattagtttgctgctagtaatgattgtgagtccaggttttgttcttattttgttttacttgatgatg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4799850 catcaatcctaataaaaacatgatcatatacaagattagtttgctgctagtaatgattgtgagtccaggttttgttcttattttgttttacttgataatg 4799751  T
Q  318 t 318  Q
    |    
T  4799750 t 4799750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 4800078 - 4800047
Alignment:
Q  20 taggttcccttgctcaacacaaccttcaagta 51  Q
    ||||||||||||||||||||||||||||||||    
T  4800078 taggttcccttgctcaacacaaccttcaagta 4800047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 23833668 - 23833370
Alignment:
Q  20 taggttcccttgctcaacacaaccttcaagtattcactctctgtttccctcgttttgatgtttgggaaaatggaggggatgttaggtgcatttagataga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23833668 taggttcccttgctcaacacaaccttcaagtattcactctctgtttccctcgttttgatgtttgggaaaatggaggggatgttaggtgcatttagataga 23833569  T
Q  120 actcaagggaggttgttatatttttccctatttataatgaaaactgtacactaagaatcccttaattgaggaaataaatctagactnnnnnnntcctaca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |       |||||||    
T  23833568 actcaagggaggttgttatatttttccctatttataatgaaaattgtacactaagaatcccttaattgaggaaataaatctagattaaaaaaatcctaca 23833469  T
Q  220 tcaatcctaataaaaacatgatcatatacaagattagtttgctgctagtaatgattgtgagtccaggttttgttcttattttgttttacttgatgatgt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  23833468 tcaatcctaataaaaacatgatcatatacaagattagtttgctgctagtaatgattgtgagtctaggttttgttcttattttgttttacttgataatgt 23833370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 13479537 - 13479618
Alignment:
Q  171 taagaatcccttaattgaggaaataaatctagactnnnnnnntcctac-atcaatcctaataaaaacatgatcatatacaag 251  Q
    |||||||||||||||||||||||||||| ||||||       || ||  |||||||||||||||||||||||||||||||||    
T  13479537 taagaatcccttaattgaggaaataaatatagactaaataaatcttaatatcaatcctaataaaaacatgatcatatacaag 13479618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 13602548 - 13602591
Alignment:
Q  20 taggttcccttgctcaacacaaccttcaagtattcactctctgt 63  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  13602548 taggtgcccttgctcaacacaaccttcaagtattcactctctgt 13602591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 19072593 - 19072540
Alignment:
Q  72 ttttgatgtttgggaaaatggaggggatgttaggtgcatttagatagaactcaa 125  Q
    |||||||||||||||| ||||||||||||||  ||||||||||| |||||||||    
T  19072593 ttttgatgtttgggaatatggaggggatgtttagtgcatttagaaagaactcaa 19072540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 19120483 - 19120430
Alignment:
Q  72 ttttgatgtttgggaaaatggaggggatgttaggtgcatttagatagaactcaa 125  Q
    |||||||||||||||| ||||||||||||||  ||||||||||| |||||||||    
T  19120483 ttttgatgtttgggaatatggaggggatgtttagtgcatttagaaagaactcaa 19120430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 51796316 - 51796391
Alignment:
Q  72 ttttgatgtttgggaaaatggaggggatgttaggtgcatttagatagaactcaagggaggttgttatatttttccc 147  Q
    ||||||||||| | ||||| |||| || ||||| || |||||||||||||| | |||||||||||||| |||||||    
T  51796316 ttttgatgtttagaaaaatagaggagaggttagttgtatttagatagaactgaggggaggttgttataattttccc 51796391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 13484099 - 13484141
Alignment:
Q  265 tagtaatgattgtgagtccaggttttgttcttattttgtttta 307  Q
    ||||||||||||||||||| |||||| ||||||||||||||||    
T  13484099 tagtaatgattgtgagtccgggttttattcttattttgtttta 13484141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 16756861 - 16756823
Alignment:
Q  265 tagtaatgattgtgagtccaggttttgttcttattttgt 303  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  16756861 tagtaatgattgtgagtccgggttttgttcttcttttgt 16756823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 19154852 - 19154810
Alignment:
Q  265 tagtaatgattgtgagtccaggttttgttcttattttgtttta 307  Q
    |||||||||||||||| | ||||||||||||| ||||||||||    
T  19154852 tagtaatgattgtgagcctaggttttgttcttcttttgtttta 19154810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 101 - 251
Target Start/End: Original strand, 128474 - 128625
Alignment:
Q  101 ttaggtgcatttagatagaactcaagggaggttgttatatttttccctatttataatgaaaactgtacactaagaatcccttaattgaggaaataaatct 200  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  128474 ttaggtgcatttagatagaactcaagggaggctgttatatgtttccctatttataatgaaaactgtacaataagaatcccttaattgaggaaataagtct 128573  T
Q  201 agactnnnnnnntcct-acatcaatcctaataaaaacatgatcatatacaag 251  Q
    |||||       || | | |||||||||||||||||||||| ||||||||||    
T  128574 agactaaataaatcttaatatcaatcctaataaaaacatgagcatatacaag 128625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 72 - 251
Target Start/End: Original strand, 214854 - 215043
Alignment:
Q  72 ttttgatgtttgggaaaatggaggggatgttaggtgcatttagatagaactc---------aagggaggttgttatatttttccctatttataatgaaaa 162  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||         ||||||||||||||||| |||||||||||||||||||||    
T  214854 ttttgatgtttgggaaaatggaggggatgttaggtgcatttagaaataactcaagggactcaagggaggttgttatatgtttccctatttataatgaaaa 214953  T
Q  163 ctgtacactaagaatcccttaattgaggaaataaatctagactnnnnnnntcct-acatcaatcctaataaaaacatgatcatatacaag 251  Q
    ||||||| |||||||||||||||||||||||||| ||| ||||       || | | |||||||||||||||||||||||||||| ||||    
T  214954 ctgtacaataagaatcccttaattgaggaaataagtctggactaaataaatcttaatatcaatcctaataaaaacatgatcatatgcaag 215043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 131205 - 131248
Alignment:
Q  20 taggttcccttgctcaacacaaccttcaagtattcactctctgt 63  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  131205 taggtgcccttgctcaacacaaccttcaagtattcactctctgt 131248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 4532924 - 4532990
Alignment:
Q  72 ttttgatgtttgggaaaatggaggggatgttaggtgcatttagatagaactcaagggaggttgttat 138  Q
    ||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||    
T  4532924 ttttgatgttttggaaattagaggggatgttaggtgcatttagatataactcaagggaggttgttat 4532990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 45640896 - 45640839
Alignment:
Q  148 tatttataatgaaaactgtacactaagaatcccttaattgaggaaataaatctagact 205  Q
    ||||| ||||||||||||||||   ||||| |||||||| ||| ||||||||||||||    
T  45640896 tatttctaatgaaaactgtacaaagagaattccttaattaaggcaataaatctagact 45640839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 7649290 - 7649367
Alignment:
Q  72 ttttgatgtttgggaaaatggaggggatgttaggtgcatttagatagaactcaagggaggttgttatatttttcccta 149  Q
    |||||||||||  |||||| ||||||||||||||| ||||||||||||||||||| ||||||||| || |||||||||    
T  7649290 ttttgatgtttcagaaaatagaggggatgttaggtccatttagatagaactcaagagaggttgttgtacttttcccta 7649367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 21801778 - 21801829
Alignment:
Q  72 ttttgatgtttgggaaaatggaggggatgttaggtgcatttagatagaactc 123  Q
    |||||||||||||||| |||||||||||||| |||||||||||| |||||||    
T  21801778 ttttgatgtttgggaatatggaggggatgtttggtgcatttagaaagaactc 21801829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University