View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_high_29 (Length: 328)
Name: NF4014_high_29
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 212 - 313
Target Start/End: Complemental strand, 6461604 - 6461506
Alignment:
| Q |
212 |
aaaaatttattagatttcatcgggtgatctgatcctttttgccatgcatcttcttttcaatgtcttgtctccttcatgcaaatgcaatggaagcatcatc |
311 |
Q |
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| T |
6461604 |
aaaaatttattagatttcaccgggt---ctgatcctttttgccatgcatcttcttttcaatgtcttgtctccttcatgcaaatgcaatggaagcatcatc |
6461508 |
T |
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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 6465434 - 6465493
Alignment:
| Q |
98 |
taaagttacttatcttcaaaaaagttagaagtattctgcataaggtatatgagattcttaaca |
160 |
Q |
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| T |
6465434 |
taaagttacttctcttcaaa---gttagaagtattctgcataaggtatatgaaattcttaaca |
6465493 |
T |
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