View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_high_3 (Length: 597)

Name: NF4014_high_3
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_high_3
NF4014_high_3
[»] chr8 (3 HSPs)
chr8 (1-351)||(6495095-6495453)
chr8 (503-591)||(14935680-14935768)
chr8 (445-501)||(6494990-6495048)
[»] chr4 (3 HSPs)
chr4 (503-591)||(1062025-1062113)
chr4 (503-569)||(31606015-31606081)
chr4 (503-569)||(31954085-31954151)
[»] chr5 (2 HSPs)
chr5 (507-591)||(34024300-34024384)
chr5 (503-569)||(12633055-12633121)
[»] chr6 (4 HSPs)
chr6 (509-591)||(34977280-34977362)
chr6 (503-569)||(26125103-26125170)
chr6 (503-569)||(25571870-25571937)
chr6 (503-569)||(26006338-26006405)
[»] chr1 (2 HSPs)
chr1 (503-586)||(20087557-20087640)
chr1 (503-569)||(45291677-45291743)
[»] chr2 (1 HSPs)
chr2 (503-569)||(23362923-23362990)
[»] chr3 (1 HSPs)
chr3 (291-335)||(38703477-38703521)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 6495453 - 6495095
Alignment:
Q  1 attttgtaatgcatcactatttattataatctgccaacctaaactttcggtaagatattgctgtatactaaaatatattttggtacaataatgaaatcat 100  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6495453 attttgtaatgcatcactgtttattataatctgccaaccttaactttcggtaagatattgctgtatactaaaatatattttggtaccataatgaaatcat 6495354  T
Q  101 gtcagtggagtctgcttgaag----agccacggcatccattaattctacctagatcatacttcctccctt-cctttataagcacttgttgcatatttcac 195  Q
    ||||||||| ||||||||| |    |||||||||||||||| ||||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||    
T  6495353 gtcagtggaatctgcttgatgagcaagccacggcatccattgattcttcctagattatacttcctcccttgcttttataagcacttgttgcatatttcac 6495254  T
Q  196 tttttaggaagattggttgt---gtaattagtttatacaatatactttttgtg-taactattatttataaaattacttttctgtacacatgactgattca 291  Q
    ||||||||||||||||||||   ||||||||| |||| |||||| ||| |||| ||||||||||| || ||||||||||| | |||||| ||||||| ||    
T  6495253 tttttaggaagattggttgtgtagtaattagtatatataatatattttgtgtgttaactattattaat-aaattacttttgtatacacacgactgatcca 6495155  T
Q  292 ataatttttaaaagcaagtgacgtttaaagcaattttgaatatacgagcctcttcagttt 351  Q
    |||||||||||||| || | |||||||||| ||| ||||||||| |||||||||| ||||    
T  6495154 ataatttttaaaagtaaatcacgtttaaagtaatgttgaatatatgagcctcttcggttt 6495095  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 503 - 591
Target Start/End: Original strand, 14935680 - 14935768
Alignment:
Q  503 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 591  Q
    ||||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||||||| ||||    
T  14935680 atcttaataatatacaaatgggaagaaacaaatggcaaaaaaatttgtaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 14935768  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 501
Target Start/End: Complemental strand, 6495048 - 6494990
Alignment:
Q  445 agttatttctcgaaaccttaaaaacacaaaaa--tattattcaagagtgatctctcgaa 501  Q
    ||||||||||| ||||||| |||||| |||||  |||||||| ||||||||||||||||    
T  6495048 agttatttctcaaaacctttaaaacataaaaaaatattattcgagagtgatctctcgaa 6494990  T

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Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 503 - 591
Target Start/End: Complemental strand, 1062113 - 1062025
Alignment:
Q  503 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 591  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1062113 atcttaataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 1062025  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 569
Target Start/End: Original strand, 31606015 - 31606081
Alignment:
Q  503 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 569  Q
    |||||||||||||||||||| ||| | | |||||| |||||| |||||  |||||||||||||||||    
T  31606015 atcttaataatatacaaatgtgaaaacataaatagaaaaaaaatttgcttcaatccaatgtgtcaaa 31606081  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 569
Target Start/End: Complemental strand, 31954151 - 31954085
Alignment:
Q  503 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 569  Q
    |||||||||||||||||||| ||||  |||||||| |||   |||||||||| |||||| |||||||    
T  31954151 atcttaataatatacaaatgtgaagccacaaataggaaatttttttgcaccagtccaatatgtcaaa 31954085  T

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Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 507 - 591
Target Start/End: Original strand, 34024300 - 34024384
Alignment:
Q  507 taataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 591  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34024300 taataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 34024384  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 503 - 569
Target Start/End: Complemental strand, 12633121 - 12633055
Alignment:
Q  503 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 569  Q
    |||||||||||||||||||| ||||| |||||||| |||||| |||||  ||||| |||||||||||    
T  12633121 atcttaataatatacaaatgtgaagacacaaataggaaaaaaatttgcttcaatctaatgtgtcaaa 12633055  T

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Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 509 - 591
Target Start/End: Original strand, 34977280 - 34977362
Alignment:
Q  509 ataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatctcac 591  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34977280 ataatatacaaatgggaagaaacaaatagcaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcatgtcac 34977362  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 503 - 569
Target Start/End: Original strand, 26125103 - 26125170
Alignment:
Q  503 atcttaataatatacaaatgggaagaaacaaatagtaaaa-aattttgcaccaatccaatgtgtcaaa 569  Q
    |||||||||||||||||||| ||||  |||||||| |||| |||||||| ||||||||||||||||||    
T  26125103 atcttaataatatacaaatgtgaagctacaaataggaaaaaaattttgccccaatccaatgtgtcaaa 26125170  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 503 - 569
Target Start/End: Original strand, 25571870 - 25571937
Alignment:
Q  503 atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa 569  Q
    |||||||||||||||||||| ||||  ||||||| | |||||| ||||| ||||||||||||||||||    
T  25571870 atcttaataatatacaaatgtgaagctacaaataggaaaaaaaatttgccccaatccaatgtgtcaaa 25571937  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 503 - 569
Target Start/End: Original strand, 26006338 - 26006405
Alignment:
Q  503 atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa 569  Q
    |||||||||||||||||||| ||||  ||||||| | |||||| ||||| ||||||||||||||||||    
T  26006338 atcttaataatatacaaatgtgaagctacaaataggaaaaaaaatttgccccaatccaatgtgtcaaa 26006405  T

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Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 503 - 586
Target Start/End: Original strand, 20087557 - 20087640
Alignment:
Q  503 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaatcctcaagccccttcat 586  Q
    |||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  20087557 atcttaataatatacaaatgtgaagaaacaaataggaaaaaaatttgcaccaatccaatgtgtcacatcctcaagcctcttcat 20087640  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 503 - 569
Target Start/End: Complemental strand, 45291743 - 45291677
Alignment:
Q  503 atcttaataatatacaaatgggaagaaacaaatagtaaaaaattttgcaccaatccaatgtgtcaaa 569  Q
    |||||||||||||||||||| ||||| |||||||| ||||||| ||||  |||||||||||||||||    
T  45291743 atcttaataatatacaaatgtgaagacacaaataggaaaaaatattgcttcaatccaatgtgtcaaa 45291677  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 503 - 569
Target Start/End: Original strand, 23362923 - 23362990
Alignment:
Q  503 atcttaataatatacaaatgggaagaaacaaata-gtaaaaaattttgcaccaatccaatgtgtcaaa 569  Q
    ||||||||||||||||||||  |||| ||||||| | ||||||  |||||||||||||||||||||||    
T  23362923 atcttaataatatacaaatgtaaagacacaaataggaaaaaaaaattgcaccaatccaatgtgtcaaa 23362990  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 38703477 - 38703521
Alignment:
Q  291 aataatttttaaaagcaagtgacgtttaaagcaattttgaatata 335  Q
    ||||||||||||||| ||||||  |||||| ||||||||||||||    
T  38703477 aataatttttaaaagtaagtgaaatttaaaacaattttgaatata 38703521  T

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